Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3838

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704391 to 706480 12205 mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706826 to 713191 12206 mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713356 to 714077 12207

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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705,896 - 12205 mRNA_3837 0.72 0.1
706,398 + 0.2
706,494 - 0.3
707,153 - 0.4
707,819 - 12206 mRNA_3838 0.16 0.4
708,040 - 12206 mRNA_3838 0.19 0.2
708,140 - 12206 mRNA_3838 0.21 2.0
709,031 + 12206 mRNA_3838 0.35 -0.3
709,236 + 12206 mRNA_3838 0.38 2.0
709,332 - 12206 mRNA_3838 0.39 1.1
709,484 - 12206 mRNA_3838 0.42 1.2
709,651 - 12206 mRNA_3838 0.44 0.1
710,645 - 12206 mRNA_3838 0.60 0.8
710,652 + 12206 mRNA_3838 0.60 -0.2
710,809 - 12206 mRNA_3838 0.63 0.2
710,875 + 12206 mRNA_3838 0.64 0.9
710,932 - 12206 mRNA_3838 0.64 1.1
711,681 + 12206 mRNA_3838 0.76 0.2
711,688 + 12206 mRNA_3838 0.76 -0.7
712,144 + 12206 mRNA_3838 0.84 -0.0
712,423 - 12206 mRNA_3838 0.88 0.0
712,660 + 0.9
712,686 - -0.4
712,990 + 0.3
713,000 - 0.7
713,141 - -0.7
713,311 + 0.4
713,424 - -0.1
713,568 + 12207 mRNA_3839 0.29 -0.8
713,577 - 12207 mRNA_3839 0.31 0.9
714,021 + 1.0
714,033 + -0.7
714,091 - 1.0