Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3819

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657932 to 659126 12186 mRNA_3819: 12187 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 659390 to 660393 12187 mRNA_3820: 12188 - K20046 SLA1 actin cytoskeleton-regulatory complex protein SLA1, at 660836 to 665185 12188

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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658,455 - 12186 mRNA_3818 0.44 0.2
658,649 - 12186 mRNA_3818 0.60 0.3
658,729 - 12186 mRNA_3818 0.67 0.2
658,843 - 12186 mRNA_3818 0.76 0.7
658,882 - 12186 mRNA_3818 0.79 0.8
658,885 + 12186 mRNA_3818 0.80 -0.8
658,978 - 12186 mRNA_3818 0.88 0.7
659,016 - 0.5
659,059 + 0.7
659,175 - 0.7
659,194 + 2.5
659,476 - 0.2
659,909 - 12187 mRNA_3819 0.52 0.7
660,409 - -0.6
660,452 - -0.5
660,458 - 0.7
660,492 - 0.7
660,492 - -0.4
660,509 - -0.0
660,539 + -0.2
660,645 - -1.4
660,646 - 0.8
660,676 - 1.1
660,787 + -1.1
660,793 + -0.1
660,824 - 0.1