Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3768

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3767: 12135 - KOG4535 HEAT and armadillo repeat-containing protein, at 536936 to 539895 12135 mRNA_3768: 12136 - HMMPfam-Protein of unknown function (DUF1275)-PF06912, at 540069 to 541238 12136 mRNA_3769: 12137 - K10669 TRPT1, TPT1 2'-phosphotransferase, at 541434 to 542462 12137

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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539,315 - 12135 mRNA_3767 0.80 0.4
539,363 - 12135 mRNA_3767 0.82 -0.0
539,478 - 12135 mRNA_3767 0.86 0.5
539,495 + 12135 mRNA_3767 0.86 -0.4
539,791 - -0.4
539,795 + 3.5
539,801 + 0.2
539,920 - 2.0
539,934 + 0.2
540,158 - 0.2
540,198 - 12136 mRNA_3768 0.11 2.1
540,498 + 12136 mRNA_3768 0.37 0.7
540,656 + 12136 mRNA_3768 0.50 -0.2
540,840 + 12136 mRNA_3768 0.66 0.2
541,380 - 1.0