Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3753

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503579 to 505478 12120 mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505655 to 508720 12121 mRNA_3754: 12122 - K01641 E2.3.3.10 hydroxymethylglutaryl-CoA synthase, at 509040 to 510998 12122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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504,708 + 12120 mRNA_3752 0.59 0.4
504,779 - 12120 mRNA_3752 0.63 2.0
504,806 + 12120 mRNA_3752 0.65 0.4
504,861 - 12120 mRNA_3752 0.67 1.7
505,449 + -1.6
505,736 - 1.2
505,880 - 0.3
506,282 + 12121 mRNA_3753 0.20 -0.7
506,299 - 12121 mRNA_3753 0.21 -1.2
506,301 - 12121 mRNA_3753 0.21 -0.9
506,745 + 12121 mRNA_3753 0.36 -0.5
506,854 + 12121 mRNA_3753 0.39 -0.6
506,858 - 12121 mRNA_3753 0.39 0.4
506,935 + 12121 mRNA_3753 0.42 -0.3
507,015 - 12121 mRNA_3753 0.44 0.3
507,156 + 12121 mRNA_3753 0.49 -0.8
507,171 + 12121 mRNA_3753 0.49 0.0
507,605 - 12121 mRNA_3753 0.64 -1.1
507,921 + 12121 mRNA_3753 0.74 -0.4
508,037 - 12121 mRNA_3753 0.78 -0.4
508,187 - 12121 mRNA_3753 0.83 -0.3
508,197 + 12121 mRNA_3753 0.83 0.0
508,205 + 12121 mRNA_3753 0.83 -1.3
508,209 + 12121 mRNA_3753 0.83 0.4
508,217 + 12121 mRNA_3753 0.84 -0.5
508,334 + 12121 mRNA_3753 0.87 -2.5
508,337 - 12121 mRNA_3753 0.87 -1.3
508,339 - 12121 mRNA_3753 0.88 -0.8
508,352 + 12121 mRNA_3753 0.88 -1.3
508,451 + -0.2
508,475 - -1.0
508,488 - -1.2
508,522 + 0.6
508,624 + -0.2
508,639 - 1.3
508,642 - -1.2
508,648 - -0.7
508,739 + -0.4
508,776 - -0.3
508,778 - 0.2
508,785 - 0.5
508,934 + 1.0
508,948 + 0.5
509,099 + 0.4