Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3706

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3704: 12072 - Hypothetical Protein, at 399058 to 399573 12072 mRNA_3705: 12073 - Hypothetical Protein, at 399729 to 400196 12073 mRNA_3706: 12074 - KOG1550 Extracellular protein SEL-1 and related proteins, at 400186 to 402852 12074 mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403479 to 405078 12075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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399,549 - 0.3
399,572 + 0.3
399,691 - -0.1
399,702 + 2.0
399,715 + 0.1
399,839 - 12073 mRNA_3705 0.24 1.8
399,872 - 12073 mRNA_3705 0.31 1.8
399,874 + 12073 mRNA_3705 0.31 0.2
399,903 - 12073 mRNA_3705 0.37 0.4
399,990 - 12073 mRNA_3705 0.56 1.4
400,000 - 12073 mRNA_3705 0.58 -0.1
400,292 - -1.0
400,296 + 1.0
400,525 + 12074 mRNA_3706 0.13 0.3
400,769 + 12074 mRNA_3706 0.22 0.0
400,992 - 12074 mRNA_3706 0.30 0.2
401,166 + 12074 mRNA_3706 0.37 0.6
401,413 - 12074 mRNA_3706 0.46 0.3
401,622 + 12074 mRNA_3706 0.54 -0.3
401,626 - 12074 mRNA_3706 0.54 0.7
401,713 - 12074 mRNA_3706 0.57 0.5
401,912 - 12074 mRNA_3706 0.65 1.0
401,922 + 12074 mRNA_3706 0.65 0.4
402,056 + 12074 mRNA_3706 0.70 -0.9
402,158 - 12074 mRNA_3706 0.74 0.5
402,180 - 12074 mRNA_3706 0.75 0.9
402,196 + 12074 mRNA_3706 0.75 -0.3
403,035 - 0.4
403,077 + -0.1
403,079 + 0.6
403,163 + -0.3
403,204 + 0.5
403,215 - 0.6
403,226 + 0.0
403,322 + 0.4
403,344 - -0.6
403,350 - 0.1
403,357 - -0.2
403,358 - -0.1
403,359 - 0.1
403,383 + 0.2
403,384 + 0.6
403,529 - -0.7