Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3696

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3695: 12063 - KOG1730 Thioredoxin-like protein, at 379073 to 379916 12063 mRNA_3696: 12064 - SUPERFAMILY--SSF53335, at 380275 to 383085 12064 mRNA_3697: 12065 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 383360 to 385326 12065

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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379,516 + 12063 mRNA_3695 0.52 0.1
379,681 + 12063 mRNA_3695 0.72 -0.6
379,710 + 12063 mRNA_3695 0.75 0.4
379,723 + 12063 mRNA_3695 0.77 0.2
379,823 + 12063 mRNA_3695 0.89 0.9
379,978 + 0.1
379,981 - 1.2
380,000 + 0.9
380,002 + -0.0
380,009 + 1.5
380,021 + 0.0
380,139 - -0.1
380,165 - 2.0
380,286 + 1.1
380,401 - 0.0
380,411 + 0.6
380,537 - 0.6
380,553 + -0.3
380,705 - 12064 mRNA_3696 0.15 0.2
381,032 - 12064 mRNA_3696 0.27 -0.3
381,320 + 12064 mRNA_3696 0.37 2.0
382,045 - 12064 mRNA_3696 0.63 1.2
382,050 - 12064 mRNA_3696 0.63 0.6
382,627 + 12064 mRNA_3696 0.84 0.2
383,243 + -0.1
383,497 - 0.3
383,516 + 0.2