Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3674

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3673: 12041 - K11251 H2A histone H2A, at 313222 to 314004 12041 mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314540 to 316836 12042 mRNA_3675: 12043 - K11251 H2A histone H2A, at 317314 to 317987 12043

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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313,638 + 12041 mRNA_3673 0.53 1.1
313,642 - 12041 mRNA_3673 0.54 0.3
313,906 - 12041 mRNA_3673 0.87 0.0
313,919 + 12041 mRNA_3673 0.89 -0.1
314,075 + 0.2
314,202 - -0.5
314,206 + -0.0
314,210 + 1.8
314,228 - 0.1
314,229 + 1.6
314,234 + -0.3
314,235 - 0.3
314,271 - 1.6
314,272 + 0.0
314,278 + -1.3
314,278 + 0.1
314,278 - -0.1
314,279 + 0.5
314,282 - -0.0
314,283 + -0.8
314,285 + -0.1
314,288 - 1.2
314,289 + 0.5
314,297 - 0.1
314,311 - 0.2
314,311 - 0.4
314,312 + 0.1
314,344 + 0.7
314,345 + -0.2
314,351 - 1.0
314,351 - -0.7
314,359 + 1.6
314,376 + 0.5
314,377 + 0.5
314,400 + 0.5
314,465 + -1.0
314,515 + -0.4
314,518 + 0.7
314,522 + -0.3
314,533 - 0.0
314,546 + -0.4
314,675 - 0.1
314,676 + 0.7
314,825 + 12042 mRNA_3674 0.12 -0.2
314,925 + 12042 mRNA_3674 0.17 0.2
314,966 + 12042 mRNA_3674 0.19 0.3
315,270 + 12042 mRNA_3674 0.32 0.4
315,536 + 12042 mRNA_3674 0.43 -0.6
316,536 + 12042 mRNA_3674 0.87 1.0
316,969 - 0.2
316,969 - 0.7
317,135 - -0.7
317,153 + -1.7
317,391 - 12043 mRNA_3675 0.11 0.9
317,592 + 12043 mRNA_3675 0.41 0.4
317,597 + 12043 mRNA_3675 0.42 0.4
317,611 + 12043 mRNA_3675 0.44 -0.2