Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3617

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3616: 11984 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 173211 to 174376 11984 mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175125 to 177580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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174,397 + 0.5
174,411 + 0.4
174,529 - 0.6
174,549 - 0.2
174,563 - 2.0
174,571 + 0.5
174,700 + -0.4
175,006 + 1.4
175,144 - 0.1
175,147 - 0.3
175,409 + 11985 mRNA_3617 0.12 1.7
175,574 + 11985 mRNA_3617 0.18 -0.6
176,185 - 11985 mRNA_3617 0.43 -0.2
176,477 - 11985 mRNA_3617 0.55 1.6
176,750 + 11985 mRNA_3617 0.66 0.1
177,363 + 1.1
177,377 - -0.6
177,390 - 0.2
177,498 + 0.7
177,531 + 0.6
177,654 - 0.5
177,654 - 0.2
177,655 - 0.8
177,661 - -0.7
177,661 + 0.3
177,669 - 0.6
177,672 + 1.0
177,673 + -0.4
177,674 + 0.4
177,675 + -0.1
177,680 - 0.3
177,682 - 0.0
177,691 - 0.3
177,696 + 0.3
177,709 - 0.2
177,710 - 0.4
177,711 - 0.8
177,713 - 0.5
177,717 - 0.4
177,727 - 0.5
177,736 - 0.8
177,736 - 0.8
177,737 + -0.3
177,737 - 1.0
177,743 + 0.9
177,752 + -0.9
177,754 + -0.1
177,755 - 1.9
177,759 - 0.7
177,762 - 0.6
177,763 - 2.4
177,771 - 0.3
177,778 + 1.0
177,787 - -1.4
177,787 - 0.7
177,789 - -0.1
177,791 - -0.5
177,797 - 0.1
177,802 + 0.1
177,804 + 0.9
177,833 - 0.7
177,858 + 0.3
177,877 + 1.2
177,883 - 0.8
177,968 - 0.9
177,979 - 1.6
177,981 + -0.0
177,982 - 1.2
178,124 + -0.4
178,158 - 0.5
178,269 + 0.8
178,440 + 11986 mRNA_3618 0.27 0.1
178,539 + 11986 mRNA_3618 0.41 0.5