Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3596

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129467 to 131137 11963 mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131256 to 132687 11964 mRNA_3597: 11965 - K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1, at 132867 to 134971 11965

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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130,317 - 11963 mRNA_3595 0.51 -0.8
130,326 + 11963 mRNA_3595 0.51 0.7
130,453 - 11963 mRNA_3595 0.59 0.8
130,462 + 11963 mRNA_3595 0.60 -0.3
131,008 + -0.1
131,062 + 0.8
131,074 + 0.2
131,076 + 0.1
131,198 + 0.2
131,200 + 1.1
131,254 - -0.7
131,268 - 1.6
131,268 - 0.2
131,276 - 0.4
131,276 - 0.0
131,277 + -0.4
131,278 - -0.9
131,278 + 0.5
131,279 + 0.1
131,285 + 1.2
131,287 + 0.2
131,302 - 1.5
131,302 - -0.6
131,303 - 0.8
131,304 + 0.8
131,308 + 0.5
131,310 + 0.9
131,312 + -0.6
131,318 - 0.6
131,320 - 0.1
131,326 + 0.8
131,326 + -0.3
131,337 + -1.3
131,338 + 0.1
131,339 + -0.0
131,340 - 2.0
131,352 - 0.2
131,354 - -1.5
131,367 - 0.0
131,418 - 11964 mRNA_3596 0.11 0.8
131,425 - 11964 mRNA_3596 0.12 -0.7
131,449 - 11964 mRNA_3596 0.13 1.0
131,467 - 11964 mRNA_3596 0.15 -0.3
131,492 + 11964 mRNA_3596 0.16 -0.0
131,607 + 11964 mRNA_3596 0.25 0.6
131,608 + 11964 mRNA_3596 0.25 0.0
131,654 + 11964 mRNA_3596 0.28 0.7
131,877 + 11964 mRNA_3596 0.43 0.4
131,921 - 11964 mRNA_3596 0.46 0.2
132,223 + 11964 mRNA_3596 0.68 -0.8
132,653 + -0.3
132,816 - 0.2
132,941 + -0.2
133,065 - 0.3
133,293 - 11965 mRNA_3597 0.20 -0.7