Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3552

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3551: 11919 - K10276 FBXL10_11, KDM2 F-box and leucine-rich repeat protein 10/11, at 28216 to 30545 11919 mRNA_3552: 11920 - K10884 XRCC6, KU70, G22P1 ATP-dependent DNA helicase 2 subunit 1, at 30770 to 33816 11920 mRNA_3553: 11921 - Hypothetical Protein, at 34390 to 35973 11921

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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29,896 + 11919 mRNA_3551 0.72 1.4
30,066 - 11919 mRNA_3551 0.79 0.2
30,500 - 0.1
30,650 + -0.4
30,653 - -0.1
30,661 + -0.7
30,789 + -0.6
30,895 + 1.2
30,908 - 0.7
30,975 - -0.3
31,065 + 1.6
31,190 - 11920 mRNA_3552 0.14 0.3
31,377 + 11920 mRNA_3552 0.20 0.5
31,813 - 11920 mRNA_3552 0.34 1.1
31,830 - 11920 mRNA_3552 0.35 -0.4
32,247 + 11920 mRNA_3552 0.48 0.4
32,411 - 11920 mRNA_3552 0.54 0.5
32,553 + 11920 mRNA_3552 0.59 1.0
32,637 - 11920 mRNA_3552 0.61 0.4
32,849 + 11920 mRNA_3552 0.68 -0.2
32,851 + 11920 mRNA_3552 0.68 2.2
32,966 - 11920 mRNA_3552 0.72 0.8
33,128 + 11920 mRNA_3552 0.77 0.1
33,274 - 11920 mRNA_3552 0.82 0.1
33,308 + 11920 mRNA_3552 0.83 -0.5
33,563 + 0.8
33,870 + 1.0
33,881 + 0.1
33,881 + 0.1
33,897 + 0.4
33,904 + 0.2
34,025 - 0.4
34,032 + 0.6
34,307 + 0.3
34,332 + 0.4
34,357 - 0.5
34,398 + -0.3
34,500 + 0.3
34,728 - 11921 mRNA_3553 0.21 1.0