Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3523

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3522: 11890 - K03008 RPB11, POLR2J DNA-directed RNA polymerase II subunit RPB11, at 303792 to 304536 11890 mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304900 to 306087 11891 mRNA_3524: 11892 - Hypothetical Protein, at 306520 to 307367 11892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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304,550 + 0.3
304,553 + 0.3
304,669 + 0.4
304,687 - -0.7
304,702 + -0.7
304,847 + 0.9
304,993 + 0.7
305,003 + -0.0
305,010 + 0.1
305,408 - 11891 mRNA_3523 0.43 0.3
305,415 - 11891 mRNA_3523 0.43 -0.3
305,701 - 11891 mRNA_3523 0.67 0.2
305,831 - 11891 mRNA_3523 0.78 0.6
305,995 - 0.7
306,002 + 1.3
306,456 + 0.2
306,584 + 0.6
306,829 + 11892 mRNA_3524 0.36 1.1
306,840 + 11892 mRNA_3524 0.38 -0.2
306,998 - 11892 mRNA_3524 0.56 0.3
307,043 + 11892 mRNA_3524 0.62 -0.3
307,053 + 11892 mRNA_3524 0.63 0.4
307,084 + 11892 mRNA_3524 0.67 0.4