Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3515

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284117 to 285391 11882 mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285817 to 288339 11883 mRNA_3516: 11884 - K01466 allB allantoinase, at 288576 to 290377 11884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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285,167 - 11882 mRNA_3514 0.82 -0.1
285,174 + 11882 mRNA_3514 0.83 0.9
285,256 + 11882 mRNA_3514 0.89 -1.0
285,285 + 0.0
285,288 - -0.1
285,294 + 0.4
285,326 - 0.6
285,382 + -0.8
285,399 + 1.1
285,434 - 2.0
285,502 - 0.9
285,502 - 0.7
285,510 + 0.5
285,510 + 0.4
285,593 - 0.6
285,609 + -0.6
285,626 - 0.6
285,743 - -0.4
286,196 - 11883 mRNA_3515 0.15 -0.0
286,344 + 11883 mRNA_3515 0.21 2.5
286,480 - 11883 mRNA_3515 0.26 0.4
287,499 + 11883 mRNA_3515 0.67 0.5
287,930 - 11883 mRNA_3515 0.84 1.5
288,654 - 0.3
288,696 + 0.5
288,739 - 0.7
288,825 - 11884 mRNA_3516 0.14 0.1
289,121 - 11884 mRNA_3516 0.30 1.5
289,324 - 11884 mRNA_3516 0.42 0.4