Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3514

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3513: 11881 - K11718 HUGT UDP-glucose-glycoprotein glucosyltransferase, at 277755 to 283906 11881 mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284117 to 285391 11882 mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285817 to 288339 11883

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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283,960 + 0.4
283,975 - 0.9
283,992 + 1.3
284,009 - 0.6
284,026 + 0.3
284,148 + -0.4
284,150 - 0.9
284,180 - 0.8
284,190 + 0.5
284,192 - 1.5
284,225 + 0.1
284,313 + 11882 mRNA_3514 0.15 0.5
284,406 + 11882 mRNA_3514 0.23 0.4
284,442 - 11882 mRNA_3514 0.25 0.9
284,541 - 11882 mRNA_3514 0.33 0.4
284,564 - 11882 mRNA_3514 0.35 1.7
284,567 + 11882 mRNA_3514 0.35 -0.3
284,579 - 11882 mRNA_3514 0.36 2.8
284,580 + 11882 mRNA_3514 0.36 -0.7
284,598 + 11882 mRNA_3514 0.38 0.3
284,718 - 11882 mRNA_3514 0.47 0.2
285,167 - 11882 mRNA_3514 0.82 -0.1
285,174 + 11882 mRNA_3514 0.83 0.9
285,256 + 11882 mRNA_3514 0.89 -1.0
285,285 + 0.0
285,288 - -0.1
285,294 + 0.4
285,326 - 0.6
285,382 + -0.8
285,399 + 1.1
285,434 - 2.0
285,502 - 0.9
285,502 - 0.7
285,510 + 0.5
285,510 + 0.4
285,593 - 0.6
285,609 + -0.6
285,626 - 0.6
285,743 - -0.4
286,196 - 11883 mRNA_3515 0.15 -0.0
286,344 + 11883 mRNA_3515 0.21 2.5