Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3478

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3477: 11845 - K07088 K07088 uncharacterized protein, at 201579 to 204327 11845 mRNA_3478: 11846 - SUPERFAMILY--SSF56112, at 204722 to 206830 11846 mRNA_3479: 11847 - SUPERFAMILY--SSF46934, at 206991 to 209346 11847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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203,850 + 11845 mRNA_3477 0.83 0.9
204,086 + -0.4
204,093 + 0.7
204,275 - -1.0
204,292 + -0.4
204,411 - -0.1
204,562 + -0.3
204,863 - 0.8
205,344 + 11846 mRNA_3478 0.29 1.6
205,576 + 11846 mRNA_3478 0.40 0.1
205,685 - 11846 mRNA_3478 0.46 -0.4
205,903 + 11846 mRNA_3478 0.56 0.1
206,072 + 11846 mRNA_3478 0.64 0.5
206,076 + 11846 mRNA_3478 0.64 0.8
206,385 - 11846 mRNA_3478 0.79 -0.5
206,599 + 11846 mRNA_3478 0.89 0.2
206,601 + 11846 mRNA_3478 0.89 0.5
206,641 + 1.6
206,774 - 0.2
206,814 - -0.0
206,856 + 0.3
206,896 - 1.3
206,899 - -0.5
206,914 - -0.2
206,915 - 0.9
206,916 + 0.1
206,924 + 0.8
206,939 + 0.7
207,042 - 0.5
207,049 - -1.0
207,052 + 0.6
207,067 + 1.3
207,205 - 1.5
207,358 - 11847 mRNA_3479 0.16 0.7
207,360 + 11847 mRNA_3479 0.16 0.0
207,735 - 11847 mRNA_3479 0.32 1.3
207,762 - 11847 mRNA_3479 0.33 0.6
207,789 - 11847 mRNA_3479 0.34 0.5