Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3446

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3445: 11813 - HMMPfam-BRO1-like domain-PF03097,ProSiteProfiles-BRO1 domain profile.-PS51180,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SMART-BRO1-like domain-SM01041, at 120363 to 121884 11813 mRNA_3446: 11814 - K07393 ECM4 putative glutathione S-transferase, at 122538 to 123846 11814 mRNA_3447: 11815 - HMMPfam-AhpC/TSA antioxidant enzyme-PF13911,SUPERFAMILY--SSF52833, at 124224 to 125009 11815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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121,632 + 11813 mRNA_3445 0.83 -0.3
121,634 - 11813 mRNA_3445 0.84 0.5
121,636 - 11813 mRNA_3445 0.84 0.8
122,049 - -0.5
122,071 - 1.6
122,231 - 0.4
122,238 + -0.0
122,238 - -0.1
122,238 - 1.0
122,239 + 0.4
122,240 + -0.2
122,245 + -0.7
122,381 - 0.8
122,514 + -0.2
122,526 + -0.5
122,669 - 11814 mRNA_3446 0.10 -0.6
122,861 - 11814 mRNA_3446 0.25 0.4
123,415 - 11814 mRNA_3446 0.67 0.0
123,676 + 11814 mRNA_3446 0.87 0.4
123,817 - 0.3
123,819 - 0.2
123,957 + 0.2
123,964 - 0.9
123,965 - 0.4
123,971 - 1.0
123,975 - -0.2
123,993 + -0.2
123,994 + 0.1
124,008 - 0.2
124,012 + -0.0
124,012 + -0.6
124,014 - -0.1
124,159 + 0.2
124,160 + -1.9
124,469 + 11815 mRNA_3447 0.31 -0.7