Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3400

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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584,873 - 11767 mRNA_3399 0.75 0.8
584,957 - 11767 mRNA_3399 0.78 0.3
585,004 - 11767 mRNA_3399 0.79 0.0
585,100 + 11767 mRNA_3399 0.82 0.3
585,100 - 11767 mRNA_3399 0.82 0.3
585,220 + 11767 mRNA_3399 0.85 0.3
585,303 - 11767 mRNA_3399 0.88 0.2
585,320 + 11767 mRNA_3399 0.88 -0.1
585,362 + 11767 mRNA_3399 0.90 0.0
585,451 + 0.1
585,474 - 0.8
585,514 - 0.4
585,613 - -0.7
585,629 + 0.2
585,638 + 1.2
585,670 + 1.0
585,767 + 0.5
585,777 - 1.8
585,792 - 0.6
585,803 + 1.2
586,039 - 11768 mRNA_3400 0.12 -0.1
587,250 - 11768 mRNA_3400 0.84 0.3
587,294 + 11768 mRNA_3400 0.86 1.0
587,300 - 11768 mRNA_3400 0.87 1.0
587,357 - 0.2
587,397 - 0.5
587,412 + -0.5
587,414 + 1.7
587,414 + -0.7
587,419 + 0.7
587,461 - 1.8
587,466 - 0.2
587,473 - 0.8
587,490 - 0.4
587,535 + 0.7
587,535 - 1.2
587,535 + 1.7
587,551 - 0.3
587,551 + 0.3
587,562 + 0.0
587,564 - -0.8
587,564 - 0.4
587,565 - 0.7
587,569 - -0.3
587,570 + 0.4
587,574 - -0.6
587,581 - 1.0
587,581 - -0.4
587,583 - 0.5
587,593 - 2.2
587,595 - -0.9
587,595 - -0.1
587,600 - 0.0