Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3377

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528897 to 531251 11744 mRNA_3377: 11745 - KOG1516 Carboxylesterase and related proteins, at 531386 to 533428 11745 mRNA_3378: 11746 - KOG1516 Carboxylesterase and related proteins, at 533955 to 535983 11746

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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530,412 + 11744 mRNA_3376 0.64 0.5
530,414 - 11744 mRNA_3376 0.64 0.4
530,419 + 11744 mRNA_3376 0.65 2.0
530,439 - 11744 mRNA_3376 0.65 1.5
530,569 + 11744 mRNA_3376 0.71 0.9
530,694 - 11744 mRNA_3376 0.76 0.1
530,736 + 11744 mRNA_3376 0.78 1.2
531,106 - -0.4
531,285 + 0.7
531,286 - 0.3
531,481 - 0.8
531,553 - 0.2
531,598 - 11745 mRNA_3377 0.10 1.3
531,687 + 11745 mRNA_3377 0.15 0.7
531,911 + 11745 mRNA_3377 0.26 0.9
532,134 + 11745 mRNA_3377 0.37 1.1
532,363 - 11745 mRNA_3377 0.48 0.4
532,612 + 11745 mRNA_3377 0.60 0.8
532,612 + 11745 mRNA_3377 0.60 -0.3
532,622 + 11745 mRNA_3377 0.60 0.0
532,635 + 11745 mRNA_3377 0.61 0.7
532,816 + 11745 mRNA_3377 0.70 0.5
532,824 + 11745 mRNA_3377 0.70 -0.1
532,881 - 11745 mRNA_3377 0.73 -0.4
532,924 - 11745 mRNA_3377 0.75 0.0
532,924 - 11745 mRNA_3377 0.75 0.4
532,925 + 11745 mRNA_3377 0.75 -0.4
532,927 - 11745 mRNA_3377 0.75 -0.2
532,949 - 11745 mRNA_3377 0.77 -0.1
533,086 + 11745 mRNA_3377 0.83 0.9
533,088 - 11745 mRNA_3377 0.83 0.9
533,089 + 11745 mRNA_3377 0.83 -0.1
533,308 - 0.5
533,453 - -0.2
533,453 - -0.0
533,524 - -0.9
533,608 - -0.5
533,990 + -0.1
534,033 - 0.3
534,080 - -0.3
534,399 - 11746 mRNA_3378 0.22 0.4