Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3376

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3375: 11743 - Hypothetical Protein, at 528388 to 528831 11743 mRNA_3376: 11744 - K12864 CTNNBL1 beta-catenin-like protein 1, at 528897 to 531251 11744 mRNA_3377: 11745 - KOG1516 Carboxylesterase and related proteins, at 531386 to 533428 11745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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527,922 + 0.6
527,997 + -0.4
528,021 - 0.5
528,022 - 0.2
528,038 + 2.2
528,061 + 0.3
528,071 - -0.1
528,091 + 0.2
528,091 - -1.5
528,182 - -0.4
528,236 + -0.4
528,359 - 2.2
528,401 + 0.1
528,486 - 11743 mRNA_3375 0.22 -0.1
528,667 + 11743 mRNA_3375 0.63 1.4
528,845 + 0.3
528,846 + -0.8
529,000 + 0.9
529,055 - -0.2
529,187 - 11744 mRNA_3376 0.12 0.8
529,243 + 11744 mRNA_3376 0.15 1.0
529,265 - 11744 mRNA_3376 0.16 0.3
529,386 + 11744 mRNA_3376 0.21 -0.7
529,556 - 11744 mRNA_3376 0.28 -0.2
529,789 - 11744 mRNA_3376 0.38 0.2
529,808 - 11744 mRNA_3376 0.39 -0.1
530,033 + 11744 mRNA_3376 0.48 1.1
530,034 - 11744 mRNA_3376 0.48 1.7
530,063 - 11744 mRNA_3376 0.50 0.3
530,150 - 11744 mRNA_3376 0.53 -1.1
530,173 - 11744 mRNA_3376 0.54 0.0
530,191 - 11744 mRNA_3376 0.55 0.2
530,280 + 11744 mRNA_3376 0.59 -0.2
530,412 + 11744 mRNA_3376 0.64 0.5
530,414 - 11744 mRNA_3376 0.64 0.4
530,419 + 11744 mRNA_3376 0.65 2.0
530,439 - 11744 mRNA_3376 0.65 1.5
530,569 + 11744 mRNA_3376 0.71 0.9
530,694 - 11744 mRNA_3376 0.76 0.1
530,736 + 11744 mRNA_3376 0.78 1.2
531,106 - -0.4
531,285 + 0.7
531,286 - 0.3
531,481 - 0.8
531,553 - 0.2
531,598 - 11745 mRNA_3377 0.10 1.3
531,687 + 11745 mRNA_3377 0.15 0.7
531,911 + 11745 mRNA_3377 0.26 0.9
532,134 + 11745 mRNA_3377 0.37 1.1