Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3341

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425589 to 428080 11708 mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428327 to 429727 11709 mRNA_3342: 11710 - PRINTS-Proline rich extensin signature-PR01217, at 430306 to 432208 11710

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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427,405 + 11708 mRNA_3340 0.73 1.7
427,405 + 11708 mRNA_3340 0.73 0.1
427,406 + 11708 mRNA_3340 0.73 -1.2
427,407 - 11708 mRNA_3340 0.73 -1.1
427,602 + 11708 mRNA_3340 0.81 0.2
427,830 + 11708 mRNA_3340 0.90 1.9
428,022 + -0.3
428,117 - 0.3
428,147 + 0.4
428,165 + -0.0
428,203 + 0.5
428,252 + 0.2
428,721 - 11709 mRNA_3341 0.28 0.1
429,172 + 11709 mRNA_3341 0.60 0.8
429,285 - 11709 mRNA_3341 0.68 -0.1
429,443 + 11709 mRNA_3341 0.80 0.1
429,595 + 1.0
429,635 - 1.4
429,739 - 0.4
429,746 + -0.9
429,750 + 0.6
429,753 - 0.5
429,838 + 0.1
429,954 - -0.1
430,081 + -0.1
430,093 - -1.2
430,123 + -1.7
430,202 - 1.2
430,243 + 0.8
430,703 - 11710 mRNA_3342 0.21 0.7
430,704 + 11710 mRNA_3342 0.21 0.7
430,710 - 11710 mRNA_3342 0.21 -0.3