Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3340

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3339: 11707 - KOG2445 Nuclear pore complex component (sc Seh1), at 423436 to 425345 11707 mRNA_3340: 11708 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 425589 to 428080 11708 mRNA_3341: 11709 - K20724 TMEM33 transmembrane protein 33, at 428327 to 429727 11709

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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424,798 + 11707 mRNA_3339 0.71 0.2
424,935 - 11707 mRNA_3339 0.78 0.8
424,944 - 11707 mRNA_3339 0.79 0.6
424,966 - 11707 mRNA_3339 0.80 -1.2
425,077 + 11707 mRNA_3339 0.86 -0.2
425,121 + 11707 mRNA_3339 0.88 1.0
425,372 + 0.3
425,378 - 0.5
425,511 + 0.7
425,522 - 0.5
425,565 + -0.0
425,658 - 2.3
425,672 - -0.0
425,675 + -0.4
425,699 + 0.6
425,871 - 11708 mRNA_3340 0.11 0.9
425,935 - 11708 mRNA_3340 0.14 1.9
426,075 - 11708 mRNA_3340 0.20 0.2
426,416 + 11708 mRNA_3340 0.33 0.2
426,837 - 11708 mRNA_3340 0.50 -0.1
426,994 + 11708 mRNA_3340 0.56 -1.0
427,045 + 11708 mRNA_3340 0.58 -1.7
427,110 - 11708 mRNA_3340 0.61 1.6
427,175 - 11708 mRNA_3340 0.64 1.2
427,405 + 11708 mRNA_3340 0.73 1.7
427,405 + 11708 mRNA_3340 0.73 0.1
427,406 + 11708 mRNA_3340 0.73 -1.2
427,407 - 11708 mRNA_3340 0.73 -1.1
427,602 + 11708 mRNA_3340 0.81 0.2
427,830 + 11708 mRNA_3340 0.90 1.9
428,022 + -0.3
428,117 - 0.3
428,147 + 0.4
428,165 + -0.0
428,203 + 0.5
428,252 + 0.2
428,721 - 11709 mRNA_3341 0.28 0.1