Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3308

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3307: 11675 - K06268 PPP3R, CNB serine/threonine-protein phosphatase 2B regulatory subunit, at 355687 to 356880 11675 mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357667 to 359935 11676 mRNA_3309: 11677 - HMMPfam-Amidohydrolase family-PF01979,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 360539 to 362421 11677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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356,755 - 11675 mRNA_3307 0.89 -0.0
356,888 - -0.2
356,897 - -0.0
356,904 - 0.3
356,914 + 1.4
356,915 - -0.2
357,040 + 0.5
357,044 - 0.1
357,074 + 0.3
357,192 + -0.5
357,196 - 0.1
357,204 + 0.6
357,343 - -0.0
357,790 + 0.7
358,233 - 11676 mRNA_3308 0.25 0.2
358,271 + 11676 mRNA_3308 0.27 0.0
358,712 + 11676 mRNA_3308 0.46 -0.2
359,243 - 11676 mRNA_3308 0.69 -0.5
359,396 - 11676 mRNA_3308 0.76 0.0
359,427 + 11676 mRNA_3308 0.78 0.2
359,430 - 11676 mRNA_3308 0.78 1.0
359,848 + 0.6
359,853 - -0.0
359,857 - 0.3
360,014 - 0.1
360,017 + -0.9
360,057 - 0.5
360,103 + 0.0
360,115 - 0.4
360,117 - 0.1
360,132 + 0.3
360,136 - -0.2
360,136 + -0.6
360,136 - 0.4
360,140 - -1.0
360,143 - -0.3
360,147 + 0.1
360,153 + 0.4
360,164 + 0.6
360,165 - 1.0
360,169 - -0.2
360,170 - -0.0
360,182 + 0.1
360,182 + 0.2
360,197 + 0.3
360,203 - -0.2
360,217 + 0.3
360,356 + 0.4
360,370 - 0.7
360,371 + 1.0
360,378 + -0.2
360,395 - 0.5
360,398 + 1.5
360,413 + 0.6
360,426 - -0.8
360,426 - 0.8
360,427 - 1.1
360,428 + 1.0
360,428 - 0.2
360,432 - 0.5
360,433 - 0.8
360,434 - -1.1
360,437 + 0.7
360,437 - 0.1
360,437 - 0.8
360,440 + 0.7
360,446 + -0.5
360,447 - 0.0
360,448 - 0.4
360,454 - -1.0
360,461 + 0.8
360,463 - 0.1
360,466 - -1.5
360,471 + 1.3
360,471 + 1.0
360,475 - 0.2
360,486 + 0.2
360,489 + 1.2
360,507 + -0.4
360,563 - 1.0
360,608 - 1.2
360,609 - 0.8
360,612 - -0.2
360,637 - 2.0
360,751 - 11677 mRNA_3309 0.11 0.1
360,763 + 11677 mRNA_3309 0.12 -0.2
360,911 + 11677 mRNA_3309 0.20 0.8