Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3251

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3250: 11618 - K00415 QCR2, UQCRC2 ubiquinol-cytochrome c reductase core subunit 2, at 212456 to 214047 11618 mRNA_3251: 11619 - K19986 EXOC8, SEC84 exocyst complex component 8, at 214294 to 217210 11619 mRNA_3252: 11620 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 217348 to 218013 11620

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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214,069 - 1.1
214,089 + 1.5
214,194 - 1.0
214,213 - 0.1
214,219 + 0.3
214,221 - 0.5
214,244 + 0.1
214,354 - 0.1
214,671 - 11619 mRNA_3251 0.13 0.4
215,191 - 11619 mRNA_3251 0.31 0.0
215,654 - 11619 mRNA_3251 0.47 -0.2
216,830 + 11619 mRNA_3251 0.87 -0.1
216,988 - 0.4
217,130 - -0.1
217,136 - -0.4
217,155 + 0.7
217,419 - 11620 mRNA_3252 0.11 -0.4
217,516 - 11620 mRNA_3252 0.25 -0.1
217,530 + 11620 mRNA_3252 0.27 1.1
217,534 - 11620 mRNA_3252 0.28 1.4
217,570 - 11620 mRNA_3252 0.33 -0.0
217,867 - 11620 mRNA_3252 0.78 -0.1
217,869 + 11620 mRNA_3252 0.78 -0.1
217,881 + 11620 mRNA_3252 0.80 0.6
217,939 - 11620 mRNA_3252 0.89 -0.0
218,014 + -0.5
218,017 + 0.1
218,136 - 0.3
218,164 + 0.2
218,166 + 1.7
218,183 + -0.1