Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3207

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3206: 11574 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 85934 to 91274 11574 mRNA_3207: 11575 - Hypothetical Protein, at 91562 to 92218 11575 mRNA_3208: 11576 - HMMPfam-Meiotically up-regulated gene 113-PF13455, at 92724 to 94778 11576

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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90,992 - 1.0
90,993 - 0.3
91,001 + 0.8
91,002 - -0.2
91,025 + 0.2
91,043 - -0.5
91,158 + -0.1
91,165 + 0.2
91,175 + -0.7
91,184 + 0.2
91,201 - 1.2
91,266 - 0.2
91,319 + -0.1
91,326 - 0.5
91,444 - 0.3
91,464 - 0.2
91,516 + -0.9
91,572 + 0.5
91,585 - 1.3
91,599 - 0.3
91,631 - 11575 mRNA_3207 0.11 0.8
91,636 + 11575 mRNA_3207 0.11 0.8
91,647 + 11575 mRNA_3207 0.13 0.3
91,658 + 11575 mRNA_3207 0.15 0.1
91,660 + 11575 mRNA_3207 0.15 0.4
91,670 + 11575 mRNA_3207 0.16 0.9
91,772 - 11575 mRNA_3207 0.32 -0.6
91,782 - 11575 mRNA_3207 0.33 0.2
91,793 - 11575 mRNA_3207 0.35 1.1
91,943 + 11575 mRNA_3207 0.58 -0.5
92,069 - 11575 mRNA_3207 0.77 0.1
92,227 - 0.9
92,235 + 1.1
92,656 - 1.5
93,094 + 11576 mRNA_3208 0.18 0.6