Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3200

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71378 to 73355 11567 mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73993 to 76977 11568 mRNA_3201: 11569 - K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1, at 77177 to 79098 11569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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73,619 + 1.3
73,622 - -0.9
73,623 + -0.0
73,624 + 0.3
73,625 - -1.3
73,641 + -0.8
73,645 + -0.1
73,645 - -0.4
73,646 + 0.1
73,649 - 0.5
73,660 + -1.4
73,667 + 0.5
73,669 - 0.8
73,780 - 0.2
73,783 - 0.8
73,788 + -1.3
73,808 - 1.1
73,813 - 0.0
73,825 + -0.0
73,845 + -0.0
73,950 + -0.1
73,950 + 0.7
73,969 + 0.5
73,974 - 1.4
74,713 - 11568 mRNA_3200 0.24 1.1
75,424 + 11568 mRNA_3200 0.48 0.3
75,554 + 11568 mRNA_3200 0.52 0.6
75,623 + 11568 mRNA_3200 0.55 0.7
75,728 + 11568 mRNA_3200 0.58 -0.9
75,751 - 11568 mRNA_3200 0.59 -0.1
75,880 + 11568 mRNA_3200 0.63 0.1
75,927 + 11568 mRNA_3200 0.65 0.3
76,071 - 11568 mRNA_3200 0.70 1.6
76,082 + 11568 mRNA_3200 0.70 0.1
76,167 - 11568 mRNA_3200 0.73 -0.4
76,341 - 11568 mRNA_3200 0.79 0.1
76,346 - 11568 mRNA_3200 0.79 -0.2
76,397 + 11568 mRNA_3200 0.81 0.8
76,460 - 11568 mRNA_3200 0.83 -0.9
76,649 + 11568 mRNA_3200 0.89 1.1
76,954 - 0.5
76,966 - -0.1
76,976 + 0.2
76,992 - 1.1
76,992 - 0.2
76,992 - 0.0
76,999 + 2.6
77,084 - 0.1
77,240 - 0.1
77,250 - 1.0
77,369 - 0.1
77,380 + 11569 mRNA_3201 0.11 0.5
77,649 - 11569 mRNA_3201 0.25 -0.0
77,832 + 11569 mRNA_3201 0.34 0.1
77,883 + 11569 mRNA_3201 0.37 0.3