Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3191

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3190: 11558 - KOG2427 Uncharacterized conserved protein, at 47974 to 50099 11558 mRNA_3191: 11559 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 50210 to 52668 11559 mRNA_3192: 11560 - HMMPfam-Hypothetical protein FLILHELTA-PF10306, at 53069 to 53726 11560

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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49,405 - 11558 mRNA_3190 0.67 0.6
49,406 + 11558 mRNA_3190 0.67 -0.3
49,526 - 11558 mRNA_3190 0.73 0.1
49,655 - 11558 mRNA_3190 0.79 0.4
49,684 - 11558 mRNA_3190 0.80 0.3
50,015 + 1.6
50,022 + 0.2
50,113 + 1.1
50,280 - 0.5
50,327 + 1.0
50,337 + 0.3
50,491 + 11559 mRNA_3191 0.11 0.2
50,505 + 11559 mRNA_3191 0.12 0.8
50,598 + 11559 mRNA_3191 0.16 0.5
50,645 - 11559 mRNA_3191 0.18 -0.6
50,826 - 11559 mRNA_3191 0.25 -0.1
50,918 - 11559 mRNA_3191 0.29 -0.3
51,048 - 11559 mRNA_3191 0.34 -1.0
51,138 + 11559 mRNA_3191 0.38 -1.6
51,175 - 11559 mRNA_3191 0.39 0.6
51,191 + 11559 mRNA_3191 0.40 -0.2
51,230 + 11559 mRNA_3191 0.41 -0.0
51,679 + 11559 mRNA_3191 0.60 0.2
51,894 + 11559 mRNA_3191 0.68 0.6
51,943 + 11559 mRNA_3191 0.70 0.6
51,960 + 11559 mRNA_3191 0.71 -0.0
51,967 - 11559 mRNA_3191 0.71 0.1
52,054 - 11559 mRNA_3191 0.75 1.5
52,183 - 11559 mRNA_3191 0.80 1.0
52,183 + 11559 mRNA_3191 0.80 -0.6
52,315 - 11559 mRNA_3191 0.86 1.5
52,566 + 0.0
52,631 + 0.3
52,894 + -0.1
52,922 - 0.3
53,157 + 11560 mRNA_3192 0.13 0.4
53,366 + 11560 mRNA_3192 0.45 -0.5
53,508 + 11560 mRNA_3192 0.67 0.6
53,523 + 11560 mRNA_3192 0.69 -0.3
53,635 - 11560 mRNA_3192 0.86 0.5