Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,174 - 11537 mRNA_3169 0.65 2.3
1,174 + 11537 mRNA_3169 0.65 -1.7
1,259 + 11537 mRNA_3169 0.73 0.2
1,265 + 11537 mRNA_3169 0.74 0.8
1,268 + 11537 mRNA_3169 0.74 0.8
1,269 - 11537 mRNA_3169 0.74 0.8
1,288 - 11537 mRNA_3169 0.76 -0.5
1,297 + 11537 mRNA_3169 0.77 -1.2
1,303 - 11537 mRNA_3169 0.78 -0.6
1,399 + 11537 mRNA_3169 0.87 1.0
1,412 - 11537 mRNA_3169 0.88 0.9
1,419 - 11537 mRNA_3169 0.89 0.3
1,423 - 11537 mRNA_3169 0.90 0.5
1,429 - 1.1
1,453 + 0.6
1,459 + -0.8
1,459 + -0.1
1,460 - 0.4
1,461 + 0.8
1,462 + 0.3
1,467 + 0.4
1,470 - 0.9
1,474 - -0.0
1,485 + 0.6
1,520 + 0.2
1,523 + 0.1
1,531 - 0.9
1,537 + 0.7
1,541 + 0.5
1,562 + 1.0
1,567 + 1.1
1,572 + 0.6
1,582 - -0.5
1,584 - 0.3
1,589 + 0.7
1,596 - 0.2
1,601 - -0.1
1,602 + -0.1
1,605 + -1.6
1,609 + -0.1
1,616 + 0.4
1,636 + -0.6
1,654 + -1.4
1,656 - 1.1
1,666 + 2.3
1,675 - 0.2
1,682 - -0.9
1,697 - 0.5
1,709 + -0.9
1,709 - -0.1
1,711 + 0.5
1,718 - -1.0
1,719 + 0.2
1,722 - 1.3
1,723 + 0.3
1,725 - 0.5
1,725 - 0.9
1,727 + -0.3
1,730 + 0.7
1,731 + 0.4
1,732 + -0.0
1,732 + 0.1
1,734 + 1.8
1,734 + 0.2
1,734 + 1.1
1,739 - 0.4
1,740 + 1.4
1,744 - 0.2
1,747 + 0.0
1,749 + 0.3
1,759 + 0.2
1,759 + 0.5
1,759 + 0.2
1,761 + -1.9
1,763 + -0.3
1,765 + -0.0
1,767 + -1.1
1,769 + 0.6
1,772 + 0.5
1,772 + -0.6
1,774 + 0.3
1,774 + -0.5
1,775 + -1.4
1,776 - -0.2
1,776 + 1.8
1,777 + 0.1
1,778 + 0.1
1,778 - -0.2
1,781 - 0.4
1,783 - -0.4
1,783 - -0.2
1,783 - 1.4
1,783 - -0.3
1,784 + -1.0
1,789 + -1.0
1,789 - 0.4
1,791 + -0.5
1,792 + -0.4
1,793 + -0.1
1,795 + 0.2
1,796 + 0.5
1,796 - 1.4
1,798 + -0.5
1,800 + -0.1
1,801 + 0.9
1,805 + 0.0
1,805 + 0.1
1,807 + -0.0
1,813 - -1.0
1,814 + 0.2
1,814 + 0.6
1,818 - 0.4
1,851 - 1.0
1,874 + 1.3
1,881 - 0.9
1,885 - -0.1
1,891 - 0.8
1,896 - 0.2
1,912 + -0.2
1,912 + 0.3
1,914 - 0.5
1,916 - -0.5
1,917 - -0.5
1,919 + 0.7
1,922 - -0.0
1,923 - 1.3
1,934 - 2.4
1,935 + 0.0
1,938 - 0.1
1,938 - 0.3
1,940 - -0.4
1,941 + 1.8
1,941 + 0.8
1,942 + 1.0
1,943 - 0.6
1,944 + -0.0
1,944 - -0.5
1,945 - 0.2
1,945 + 0.3
1,946 - 0.2
1,947 + -0.1
1,960 - 0.3
1,968 + -0.1
1,980 + 1.4
2,015 + 1.6
2,067 - -1.2
2,081 - 0.7
2,091 + 1.1
2,220 + 0.0
2,229 - -0.5
2,235 - -0.4
2,237 - 0.1
2,242 + 0.7
2,242 - 0.3
2,245 - -0.2
2,248 - -0.2
2,251 + 0.0
2,254 - -0.0
2,261 + 0.7
2,262 - 1.4
2,266 + -0.3
2,268 + 1.7
2,400 + 11538 mRNA_3170 0.21 0.1
2,401 - 11538 mRNA_3170 0.21 2.1
2,404 + 11538 mRNA_3170 0.22 2.4
2,414 + 11538 mRNA_3170 0.23 0.1
2,420 - 11538 mRNA_3170 0.23 0.7
2,439 + 11538 mRNA_3170 0.25 0.7
2,446 + 11538 mRNA_3170 0.26 -1.6
2,470 - 11538 mRNA_3170 0.28 2.3
2,516 - 11538 mRNA_3170 0.32 0.2
2,550 - 11538 mRNA_3170 0.35 1.4
2,553 + 11538 mRNA_3170 0.36 1.2
2,569 + 11538 mRNA_3170 0.37 0.8
2,573 - 11538 mRNA_3170 0.38 1.0
2,581 + 11538 mRNA_3170 0.38 -0.7
2,582 + 11538 mRNA_3170 0.38 2.2
2,611 + 11538 mRNA_3170 0.41 0.4
2,698 + 11538 mRNA_3170 0.49 0.4
2,699 + 11538 mRNA_3170 0.49 0.9
2,755 + 11538 mRNA_3170 0.55 0.3
2,853 + 11538 mRNA_3170 0.64 1.2
3,014 - 11538 mRNA_3170 0.79 -0.1
3,407 - 0.6
3,547 - -0.2
3,604 + 1.3
3,607 + 0.6
3,739 - 1.0
3,768 + 1.8
4,061 + -0.7
4,136 - 0.7
4,162 + 0.6
4,176 + 1.0