Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12 + 1.1
12 + 0.1
15 + 1.2
16 + -0.1
18 + -0.9
22 + -0.2
25 + -0.3
57 - 0.3
61 - 1.1
62 + -0.5
62 + 0.6
66 + -0.5
72 + 0.9
72 + -0.4
72 + -0.1
75 + -0.2
78 - -0.2
105 + 0.4
110 - 0.1
114 + 0.1
115 + -0.4
118 + -0.5
122 + -0.3
122 - -0.2
124 + 0.2
135 + 1.3
147 + -1.6
157 + 0.4
161 + 0.8
168 + -1.1
174 + -1.2
177 - 0.2
228 + -0.7
247 + 0.3
252 - 2.0
253 - 2.2
255 + 1.2
258 + -0.1
264 - 0.2
269 + 0.7
269 - -0.8
274 + 0.4
275 - -0.6
277 + -0.8
280 + 0.5
280 + 2.2
283 - 0.3
285 - -0.4
287 + -0.3
287 + 1.2
288 + 0.1
292 - -0.2
293 + -0.7
298 + 0.4
305 - 0.6
314 + 0.8
320 + -0.4
368 + 0.5
370 - -0.0
372 + -0.2
382 + 1.5
384 + 0.4
391 + 1.0
391 - 1.6
397 + -0.0
397 - -0.3
402 + 0.3
405 + 0.7
423 - -0.3
430 + -0.3
440 + 0.7
446 + -0.5
470 + -0.5
524 + 1.0
532 + 0.2
545 - 0.1
557 + -0.4
569 + 0.8
570 - -0.7
583 + 0.6
584 + -0.1
603 - 0.3
603 + -0.1
634 - 11537 mRNA_3169 0.11 0.5
636 + 11537 mRNA_3169 0.11 0.2
646 + 11537 mRNA_3169 0.12 0.6
661 + 11537 mRNA_3169 0.13 0.7
667 + 11537 mRNA_3169 0.14 0.5
698 + 11537 mRNA_3169 0.17 0.5
704 - 11537 mRNA_3169 0.18 0.4
705 - 11537 mRNA_3169 0.18 0.4
721 - 11537 mRNA_3169 0.19 -0.2
725 + 11537 mRNA_3169 0.20 1.0
738 - 11537 mRNA_3169 0.21 0.8
849 + 11537 mRNA_3169 0.32 -0.4
871 + 11537 mRNA_3169 0.34 -0.4
883 + 11537 mRNA_3169 0.35 1.4
894 + 11537 mRNA_3169 0.37 0.1
895 + 11537 mRNA_3169 0.37 0.0
922 + 11537 mRNA_3169 0.39 2.2
965 - 11537 mRNA_3169 0.44 -1.4
1,012 - 11537 mRNA_3169 0.48 0.2
1,026 + 11537 mRNA_3169 0.50 -0.7
1,026 + 11537 mRNA_3169 0.50 0.3
1,105 + 11537 mRNA_3169 0.58 0.6
1,123 + 11537 mRNA_3169 0.60 0.2
1,141 + 11537 mRNA_3169 0.61 0.5
1,142 + 11537 mRNA_3169 0.61 0.7
1,165 + 11537 mRNA_3169 0.64 -0.3
1,174 - 11537 mRNA_3169 0.65 2.3
1,174 + 11537 mRNA_3169 0.65 -1.7
1,259 + 11537 mRNA_3169 0.73 0.2
1,265 + 11537 mRNA_3169 0.74 0.8
1,268 + 11537 mRNA_3169 0.74 0.8
1,269 - 11537 mRNA_3169 0.74 0.8
1,288 - 11537 mRNA_3169 0.76 -0.5
1,297 + 11537 mRNA_3169 0.77 -1.2
1,303 - 11537 mRNA_3169 0.78 -0.6
1,399 + 11537 mRNA_3169 0.87 1.0
1,412 - 11537 mRNA_3169 0.88 0.9
1,419 - 11537 mRNA_3169 0.89 0.3
1,423 - 11537 mRNA_3169 0.90 0.5
1,429 - 1.1
1,453 + 0.6
1,459 + -0.8
1,459 + -0.1
1,460 - 0.4
1,461 + 0.8
1,462 + 0.3
1,467 + 0.4
1,470 - 0.9
1,474 - -0.0
1,485 + 0.6
1,520 + 0.2
1,523 + 0.1
1,531 - 0.9
1,537 + 0.7
1,541 + 0.5
1,562 + 1.0
1,567 + 1.1
1,572 + 0.6
1,582 - -0.5
1,584 - 0.3
1,589 + 0.7
1,596 - 0.2
1,601 - -0.1
1,602 + -0.1
1,605 + -1.6
1,609 + -0.1
1,616 + 0.4
1,636 + -0.6
1,654 + -1.4
1,656 - 1.1
1,666 + 2.3
1,675 - 0.2
1,682 - -0.9
1,697 - 0.5
1,709 + -0.9
1,709 - -0.1
1,711 + 0.5
1,718 - -1.0
1,719 + 0.2
1,722 - 1.3
1,723 + 0.3
1,725 - 0.5
1,725 - 0.9
1,727 + -0.3
1,730 + 0.7
1,731 + 0.4
1,732 + -0.0
1,732 + 0.1
1,734 + 1.8
1,734 + 0.2
1,734 + 1.1
1,739 - 0.4
1,740 + 1.4
1,744 - 0.2
1,747 + 0.0
1,749 + 0.3
1,759 + 0.2
1,759 + 0.5
1,759 + 0.2
1,761 + -1.9
1,763 + -0.3
1,765 + -0.0
1,767 + -1.1
1,769 + 0.6
1,772 + 0.5
1,772 + -0.6
1,774 + 0.3
1,774 + -0.5
1,775 + -1.4
1,776 - -0.2
1,776 + 1.8
1,777 + 0.1
1,778 + 0.1
1,778 - -0.2
1,781 - 0.4
1,783 - -0.4
1,783 - -0.2
1,783 - 1.4
1,783 - -0.3
1,784 + -1.0
1,789 + -1.0
1,789 - 0.4
1,791 + -0.5
1,792 + -0.4
1,793 + -0.1
1,795 + 0.2
1,796 + 0.5
1,796 - 1.4
1,798 + -0.5
1,800 + -0.1
1,801 + 0.9
1,805 + 0.0
1,805 + 0.1
1,807 + -0.0
1,813 - -1.0
1,814 + 0.2
1,814 + 0.6
1,818 - 0.4
1,851 - 1.0
1,874 + 1.3
1,881 - 0.9
1,885 - -0.1
1,891 - 0.8
1,896 - 0.2
1,912 + -0.2
1,912 + 0.3
1,914 - 0.5
1,916 - -0.5
1,917 - -0.5
1,919 + 0.7
1,922 - -0.0
1,923 - 1.3
1,934 - 2.4
1,935 + 0.0
1,938 - 0.1
1,938 - 0.3
1,940 - -0.4
1,941 + 1.8
1,941 + 0.8
1,942 + 1.0
1,943 - 0.6
1,944 + -0.0
1,944 - -0.5
1,945 - 0.2
1,945 + 0.3
1,946 - 0.2
1,947 + -0.1
1,960 - 0.3
1,968 + -0.1
1,980 + 1.4
2,015 + 1.6
2,067 - -1.2
2,081 - 0.7
2,091 + 1.1
2,220 + 0.0
2,229 - -0.5
2,235 - -0.4
2,237 - 0.1
2,242 + 0.7
2,242 - 0.3
2,245 - -0.2
2,248 - -0.2
2,251 + 0.0
2,254 - -0.0
2,261 + 0.7
2,262 - 1.4
2,266 + -0.3
2,268 + 1.7
2,400 + 11538 mRNA_3170 0.21 0.1
2,401 - 11538 mRNA_3170 0.21 2.1
2,404 + 11538 mRNA_3170 0.22 2.4
2,414 + 11538 mRNA_3170 0.23 0.1
2,420 - 11538 mRNA_3170 0.23 0.7
2,439 + 11538 mRNA_3170 0.25 0.7
2,446 + 11538 mRNA_3170 0.26 -1.6
2,470 - 11538 mRNA_3170 0.28 2.3
2,516 - 11538 mRNA_3170 0.32 0.2