Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3151

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518 mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519 mRNA_3152: 11520 - Interpro PET assembly of cytochrome c oxidase, mitochondrial, at 438780 to 439151 11520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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435,484 + 11518 mRNA_3150 0.35 -0.1
435,485 + 11518 mRNA_3150 0.35 -0.9
435,564 - 11518 mRNA_3150 0.41 -0.4
435,571 + 11518 mRNA_3150 0.42 0.3
435,684 - 11518 mRNA_3150 0.51 1.4
435,702 + 11518 mRNA_3150 0.52 0.3
435,718 - 11518 mRNA_3150 0.53 1.0
435,843 - 11518 mRNA_3150 0.63 0.4
435,865 + 11518 mRNA_3150 0.65 0.9
435,979 - 11518 mRNA_3150 0.73 -0.1
436,001 - 11518 mRNA_3150 0.75 1.4
436,102 - 11518 mRNA_3150 0.83 0.3
436,241 + 0.5
436,445 + -0.8
436,643 + -0.1
436,712 - 11519 mRNA_3151 0.14 0.3
436,734 - 11519 mRNA_3151 0.16 0.6
436,799 + 11519 mRNA_3151 0.20 0.9
436,895 + 11519 mRNA_3151 0.25 -0.5
436,901 + 11519 mRNA_3151 0.26 0.9
437,009 - 11519 mRNA_3151 0.32 0.8
437,041 + 11519 mRNA_3151 0.34 -0.0
437,214 - 11519 mRNA_3151 0.45 0.5
437,264 + 11519 mRNA_3151 0.48 -0.6
437,296 + 11519 mRNA_3151 0.50 0.1
437,300 + 11519 mRNA_3151 0.50 0.8
437,300 - 11519 mRNA_3151 0.50 -0.3
437,303 - 11519 mRNA_3151 0.50 0.3
437,315 - 11519 mRNA_3151 0.51 0.6
437,328 - 11519 mRNA_3151 0.52 -0.0
437,329 + 11519 mRNA_3151 0.52 0.5
437,445 - 11519 mRNA_3151 0.59 0.3
437,445 - 11519 mRNA_3151 0.59 0.2
437,488 - 11519 mRNA_3151 0.62 0.9
437,491 + 11519 mRNA_3151 0.62 0.4
437,493 - 11519 mRNA_3151 0.62 0.0
437,504 + 11519 mRNA_3151 0.63 0.7
437,524 - 11519 mRNA_3151 0.64 0.4
437,547 - 11519 mRNA_3151 0.65 0.0
437,639 + 11519 mRNA_3151 0.71 1.1
437,650 + 11519 mRNA_3151 0.72 0.4
437,673 - 11519 mRNA_3151 0.73 0.1
437,673 + 11519 mRNA_3151 0.73 -0.5
437,682 - 11519 mRNA_3151 0.74 -1.4
437,694 + 11519 mRNA_3151 0.74 0.1
437,717 + 11519 mRNA_3151 0.76 0.9
437,736 - 11519 mRNA_3151 0.77 0.8
437,763 + 11519 mRNA_3151 0.79 -1.5
437,781 + 11519 mRNA_3151 0.80 -1.0
437,786 - 11519 mRNA_3151 0.80 0.5
437,793 + 11519 mRNA_3151 0.81 1.2
437,803 - 11519 mRNA_3151 0.81 -0.1
437,811 + 11519 mRNA_3151 0.82 0.7
437,818 - 11519 mRNA_3151 0.82 1.1
437,818 - 11519 mRNA_3151 0.82 0.6
437,819 + 11519 mRNA_3151 0.82 0.4
437,820 - 11519 mRNA_3151 0.82 0.9
437,825 - 11519 mRNA_3151 0.83 0.4
437,826 - 11519 mRNA_3151 0.83 1.4
437,828 - 11519 mRNA_3151 0.83 1.7
437,828 - 11519 mRNA_3151 0.83 -0.3
437,830 - 11519 mRNA_3151 0.83 -0.1
437,832 + 11519 mRNA_3151 0.83 0.1
437,833 - 11519 mRNA_3151 0.83 1.8
437,835 - 11519 mRNA_3151 0.83 1.1
437,836 - 11519 mRNA_3151 0.83 1.5
437,836 + 11519 mRNA_3151 0.83 2.7
437,836 + 11519 mRNA_3151 0.83 0.4
437,839 - 11519 mRNA_3151 0.83 0.3
437,840 - 11519 mRNA_3151 0.83 0.9
437,840 - 11519 mRNA_3151 0.83 -0.3
437,842 - 11519 mRNA_3151 0.84 0.2
437,843 + 11519 mRNA_3151 0.84 0.8
437,844 - 11519 mRNA_3151 0.84 -0.2
437,845 + 11519 mRNA_3151 0.84 1.3
437,846 - 11519 mRNA_3151 0.84 0.1
437,847 + 11519 mRNA_3151 0.84 -0.3
437,847 + 11519 mRNA_3151 0.84 1.9
437,847 + 11519 mRNA_3151 0.84 -0.1
437,847 + 11519 mRNA_3151 0.84 0.2
437,848 + 11519 mRNA_3151 0.84 0.4
437,850 - 11519 mRNA_3151 0.84 0.7
437,850 + 11519 mRNA_3151 0.84 0.8
437,851 + 11519 mRNA_3151 0.84 0.8
437,851 + 11519 mRNA_3151 0.84 0.5
437,852 + 11519 mRNA_3151 0.84 0.6
437,853 + 11519 mRNA_3151 0.84 -0.1
437,853 + 11519 mRNA_3151 0.84 0.0
437,853 - 11519 mRNA_3151 0.84 0.5
437,854 - 11519 mRNA_3151 0.84 0.0
437,855 + 11519 mRNA_3151 0.84 0.7
437,855 + 11519 mRNA_3151 0.84 0.1
437,856 + 11519 mRNA_3151 0.84 0.1
437,857 + 11519 mRNA_3151 0.84 1.5
437,862 - 11519 mRNA_3151 0.85 -0.0
437,866 + 11519 mRNA_3151 0.85 1.5
437,867 + 11519 mRNA_3151 0.85 1.1
437,867 + 11519 mRNA_3151 0.85 0.8
437,868 - 11519 mRNA_3151 0.85 0.2
437,870 + 11519 mRNA_3151 0.85 1.2
437,870 - 11519 mRNA_3151 0.85 -0.7
437,870 + 11519 mRNA_3151 0.85 0.8
437,872 + 11519 mRNA_3151 0.85 -0.2
437,873 - 11519 mRNA_3151 0.85 0.0
437,873 + 11519 mRNA_3151 0.85 0.6
437,874 + 11519 mRNA_3151 0.86 -1.5
437,874 + 11519 mRNA_3151 0.86 0.4
437,884 + 11519 mRNA_3151 0.86 0.6
437,897 + 11519 mRNA_3151 0.87 -0.7
437,905 - 11519 mRNA_3151 0.87 -0.6
437,914 - 11519 mRNA_3151 0.88 -0.2
437,920 + 11519 mRNA_3151 0.88 -0.1
437,924 - 11519 mRNA_3151 0.89 0.3
437,927 - 11519 mRNA_3151 0.89 -0.6
437,927 + 11519 mRNA_3151 0.89 0.3
437,936 + 11519 mRNA_3151 0.89 0.3
437,936 - 11519 mRNA_3151 0.89 0.1
437,940 + 11519 mRNA_3151 0.90 -0.4
437,951 - 0.4
437,958 + 1.3
437,996 + 1.0
438,035 - -0.0
438,041 - -0.6
438,047 - -0.1
438,050 + 0.3
438,051 - 0.6
438,053 + -0.1
438,058 - 0.1
438,058 - -0.3
438,059 - -0.0
438,061 - -1.0
438,061 + 0.7
438,061 + 0.7
438,062 + 0.0
438,064 + 0.3
438,066 - 0.8
438,067 - 0.8
438,067 - 1.7
438,069 - 0.2
438,070 - 0.0
438,070 + 0.4
438,070 - 0.1
438,072 - 0.0
438,076 + -0.4
438,077 + 1.3
438,077 + 0.9
438,080 - -0.2
438,080 + -0.5
438,082 - 1.2
438,083 + 0.7
438,085 + 1.2
438,089 - 1.4
438,089 + 0.7
438,090 - 0.1
438,091 - 1.0
438,094 + 0.3
438,098 + 0.1
438,106 + 0.7
438,107 + -0.7
438,112 + 0.2
438,112 + 0.2
438,124 + 0.2
438,131 - 0.7
438,142 - -0.2
438,148 - 0.3
438,150 - 1.1
438,161 + 0.6
438,168 - 0.6
438,180 - -0.2
438,180 + -0.2
438,181 + 0.3
438,193 + -1.2
438,195 - 0.7
438,208 - 1.7
438,208 + -0.1
438,227 + 0.0
438,231 - 0.2
438,233 - -0.9
438,234 - -0.2
438,236 + 0.3
438,237 - 0.3
438,239 + -0.2
438,242 + 0.5
438,242 + -0.3
438,252 - 0.1
438,253 - -0.6
438,257 - 1.0
438,257 - 0.3
438,259 + 0.2
438,259 + 1.4
438,263 - 0.9
438,264 + 2.9
438,266 - 0.3
438,282 + 1.9
438,283 - 1.3
438,287 - 0.3
438,294 - -0.8
438,303 - 0.0
438,306 + 0.4
438,316 - 0.7
438,319 + 1.3
438,320 - 0.0
438,326 + 0.7
438,330 - -0.3
438,341 + -0.7
438,344 - 1.4
438,346 - 0.4
438,347 - -0.1
438,361 - -0.9
438,368 + -0.2
438,380 - 0.1
438,414 - -0.1
438,426 - 0.6
438,436 - -0.1
438,446 + 0.5
438,469 - 1.5
438,471 - 0.3
438,472 + -0.0
438,478 - 1.2
438,503 + 1.0
438,542 - -0.1
438,552 + 0.8
438,560 - 2.5
438,603 - 0.1
438,612 - 0.5
438,614 - -0.4
438,629 + -0.1
438,643 + -1.2
438,645 + 0.0
438,655 - 0.2
438,662 - 0.4
438,778 - 0.4
438,784 + -0.3
438,844 - 11520 mRNA_3152 0.17 0.6
438,898 + 11520 mRNA_3152 0.32 0.2
438,920 + 11520 mRNA_3152 0.38 0.7
438,952 - 11520 mRNA_3152 0.46 1.4
439,046 - 11520 mRNA_3152 0.72 1.2
439,067 - 11520 mRNA_3152 0.77 -0.2
439,080 + 11520 mRNA_3152 0.81 0.8
439,089 + 11520 mRNA_3152 0.83 0.8