Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3149

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429143 to 430117 11516 mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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429,926 - 11516 mRNA_3148 0.80 0.6
430,048 + -0.6
430,050 + 0.0
430,050 + -0.7
430,054 + 0.7
430,090 - 0.1
430,179 - -0.9
430,180 - 1.0
430,181 - 0.1
430,187 + -0.3
430,191 - -0.2
430,192 + -0.0
430,196 + 1.9
430,198 + 0.7
430,208 + 1.0
430,227 + 0.7
430,227 + 0.6
430,286 - 0.7
430,302 - 0.4
430,308 - 0.0
430,309 + 0.4
430,312 - -2.1
430,317 - 0.5
430,321 - 0.4
430,330 - 2.1
430,340 - -0.0
430,382 - -0.1
430,385 + -1.4
430,393 - 0.5
430,427 - -0.0
430,433 + 0.2
430,448 + -0.5
430,454 - -0.8
430,457 + -0.7
430,458 + 0.2
430,471 - 0.4
430,472 - 1.0
430,477 - 0.0
430,478 + 1.1
430,483 + 0.4
430,484 + 0.4
430,484 + 0.6
430,485 + 0.3
430,485 + 0.8
430,486 + 0.4
430,494 - 0.7
430,494 - 1.5
430,497 + 0.7
430,497 + 0.8
430,497 + 0.3
430,500 + -0.9
430,502 + -0.1
430,526 - 0.4
430,534 - 0.0
430,542 - 0.5
430,542 - -0.5
430,543 - -0.2
430,545 - 0.3
430,545 - 1.2
430,546 + 1.5
430,546 + 0.2
430,546 - 0.4
430,553 - -1.2
430,553 - 0.8
430,553 - -0.3
430,555 - 0.1
430,555 - -0.5
430,557 - 0.3
430,557 - 0.2
430,558 + -0.2
430,558 + -0.2
430,561 + 1.5
430,562 + 0.3
430,567 - -0.6
430,569 - -0.8
430,569 + 0.3
430,569 - 1.0
430,573 - 0.9
430,573 - 0.4
430,573 - -0.6
430,575 - 0.9
430,576 + -0.4
430,577 - -0.5
430,577 + -0.1
430,578 + 0.4
430,579 + -0.2
430,584 - 0.5
430,585 - 1.1
430,587 + 0.1
430,588 + 0.2
430,588 - -0.3
430,593 - 0.8
430,594 + -0.4
430,596 - 0.3
430,596 + 0.3
430,597 + -1.2
430,601 - 0.5
430,605 + 0.5
430,605 - 0.4
430,606 + 0.4
430,606 - -0.4
430,609 - 0.8
430,615 + 0.4
430,620 + 0.6
430,622 + 1.3
430,629 - 1.7
430,638 - 1.5
430,640 - 1.8
430,644 + -0.1
430,644 - -0.0
430,645 - 1.7
430,645 + 0.3
430,646 + -1.1
430,657 - 0.5
430,658 + 0.2
430,670 - 0.5
430,685 - -1.0
430,705 + -0.1
430,707 + 1.6
430,714 - -0.5
430,717 + -0.0
430,723 - 0.3
430,729 + -0.0
430,733 - 0.4
430,741 - 0.8
430,743 - 1.6
430,745 - -0.1
430,745 - -0.3
430,745 - 0.6
430,748 - 0.2
430,748 - -0.1
430,748 - 0.5
430,752 - 0.3
430,752 - 0.3
430,769 + -0.1
430,774 + 0.5
430,794 - 1.1
430,806 - 0.9
430,813 + 0.8
430,821 + -0.2
430,826 + 0.2
430,828 + 0.3
430,830 - 2.8
430,832 - -0.9
430,835 + -0.1
430,835 + -0.7
430,836 - 0.3
430,837 + 1.6
430,838 + 1.0
430,845 - -0.8
430,846 - -0.0
430,847 + -0.4
430,849 - -0.1
430,850 + -0.1
430,852 - -1.2
430,852 - -0.2
430,853 - 0.8
430,853 - 2.0
430,857 + 0.4
430,868 - 0.1
430,871 - 1.7
430,872 - 0.6
430,872 + 0.4
430,874 - 0.8
430,874 - 0.2
430,876 + 0.3
430,876 - 1.2
430,877 + 0.5
430,877 + 0.7
430,877 - -0.0
430,881 - 0.2
430,882 + -0.6
430,884 + 1.3
430,887 + 1.6
430,894 - -0.2
430,908 - 0.4
430,909 - -1.0
430,911 - 0.2
430,921 - 0.2
430,923 - -0.4
430,924 + 0.1
430,924 + 0.0
430,928 - -0.3
430,930 - 0.7
430,937 + 1.8
430,938 + 1.2
430,940 + 0.5
430,940 + 2.9
430,941 + -0.5
430,951 + -1.7
430,956 + -0.4
430,962 - 0.4
430,964 - -0.4
430,964 + -0.2
430,964 - 0.6
430,968 - 0.4
430,970 + 0.9
430,974 + -0.6
430,976 + 0.0
430,977 + -0.2
430,978 - -0.7
430,978 - -0.9
430,978 - 0.1
430,979 + 1.9
430,979 + 1.1
430,999 + -0.0
431,003 - 0.3
431,003 - -0.8
431,008 - -0.0
431,010 - -0.9
431,012 - 0.2
431,012 - -0.1
431,016 - 0.5
431,016 - -1.0
431,023 + 0.2
431,024 - 0.2
431,027 - -0.7
431,028 + 0.2
431,029 - 0.8
431,031 - 1.0
431,031 - 0.5
431,032 + 1.3
431,033 - 1.8
431,040 - 0.5
431,041 + 0.6
431,049 + 0.4
431,052 - 0.5
431,052 - 1.8
431,063 - 0.4
431,065 - 0.6
431,066 + 0.2
431,066 + 0.2
431,084 - -0.7
431,087 - 0.1
431,089 + -0.2
431,101 - 0.4
431,110 - 0.9
431,110 + -0.2
431,114 + 0.1
431,120 - 0.4
431,120 + 0.1
431,122 - 1.0
431,143 - 0.4
431,150 - 0.1
431,158 - 0.8
431,159 - 0.6
431,169 - -0.5
431,190 + 0.3
431,193 + 0.1
431,196 - 0.4
431,214 - 0.3
431,237 - 0.4
431,244 + 11517 mRNA_3149 0.10 0.4
431,265 - 11517 mRNA_3149 0.11 0.3
431,275 + 11517 mRNA_3149 0.11 0.8
431,285 + 11517 mRNA_3149 0.11 0.3
431,298 - 11517 mRNA_3149 0.12 0.9
431,310 - 11517 mRNA_3149 0.12 0.6
431,310 - 11517 mRNA_3149 0.12 0.5
431,322 - 11517 mRNA_3149 0.12 -0.3
431,323 - 11517 mRNA_3149 0.12 0.8
431,332 + 11517 mRNA_3149 0.13 -1.2
431,351 + 11517 mRNA_3149 0.13 0.9
431,376 + 11517 mRNA_3149 0.14 -0.9
431,456 - 11517 mRNA_3149 0.16 -0.9
431,471 + 11517 mRNA_3149 0.17 0.2
431,482 - 11517 mRNA_3149 0.17 1.7
431,487 - 11517 mRNA_3149 0.17 0.1
431,487 - 11517 mRNA_3149 0.17 -0.1
431,516 + 11517 mRNA_3149 0.18 0.5
431,605 + 11517 mRNA_3149 0.20 1.1
431,608 - 11517 mRNA_3149 0.20 0.6
431,614 - 11517 mRNA_3149 0.21 -0.4
431,625 - 11517 mRNA_3149 0.21 1.3
431,626 + 11517 mRNA_3149 0.21 -0.1
431,735 + 11517 mRNA_3149 0.24 0.1
431,765 - 11517 mRNA_3149 0.25 0.1
431,899 - 11517 mRNA_3149 0.29 -0.4
431,920 - 11517 mRNA_3149 0.29 0.5
432,051 + 11517 mRNA_3149 0.33 0.4
432,058 - 11517 mRNA_3149 0.33 1.3
432,090 - 11517 mRNA_3149 0.34 0.2
432,196 + 11517 mRNA_3149 0.37 0.6
432,310 + 11517 mRNA_3149 0.40 -0.8
432,349 + 11517 mRNA_3149 0.41 -0.2
432,361 + 11517 mRNA_3149 0.42 0.4
432,471 + 11517 mRNA_3149 0.45 0.4
432,513 - 11517 mRNA_3149 0.46 1.4
432,747 - 11517 mRNA_3149 0.53 0.5
432,778 - 11517 mRNA_3149 0.54 -0.1
432,788 + 11517 mRNA_3149 0.54 0.3
432,790 - 11517 mRNA_3149 0.54 0.7
432,800 + 11517 mRNA_3149 0.54 0.6
432,883 - 11517 mRNA_3149 0.56 -0.0
432,886 - 11517 mRNA_3149 0.57 0.5
432,887 + 11517 mRNA_3149 0.57 -0.7
432,929 + 11517 mRNA_3149 0.58 0.6
432,945 - 11517 mRNA_3149 0.58 0.1
432,959 - 11517 mRNA_3149 0.59 0.9
432,969 + 11517 mRNA_3149 0.59 0.2
433,396 + 11517 mRNA_3149 0.71 0.2
433,575 - 11517 mRNA_3149 0.76 -0.1
433,800 + 11517 mRNA_3149 0.82 0.7
433,811 - 11517 mRNA_3149 0.83 -0.1
433,814 + 11517 mRNA_3149 0.83 -1.1
433,814 - 11517 mRNA_3149 0.83 -0.3
434,112 + 1.7
434,119 - 0.3
434,238 - 0.2
434,255 - 0.8
434,278 - 0.1
434,296 - 0.8
434,379 + -0.3
434,393 + 0.6
434,395 + 0.3
434,395 - 0.1
434,399 - -1.6
434,400 - -0.5
434,514 - 1.2
434,518 + 0.2
434,524 + 0.3
434,531 - 0.4
434,541 + 0.5
434,544 + 1.2
434,544 - -0.4
434,644 - 1.0
434,665 + 0.7
434,671 + 0.3
434,672 - 0.4
434,675 - -0.2
434,677 - 0.4
434,689 - 1.0
434,689 + 0.4
434,691 + 0.0
434,694 + 0.1
434,699 + 2.5
434,720 - 0.2
434,757 - 0.3
434,817 - 0.1
434,819 + -0.4
434,836 + -0.4
434,865 + 1.1
434,978 + -0.1
434,983 - 1.2
434,992 + 0.4
434,997 - -0.1
435,105 - 0.7
435,109 - 0.7
435,123 - -0.9
435,407 + 11518 mRNA_3150 0.29 0.5