Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3147

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3146: 11514 - K11273 DDX11, CHL1, CTF1 chromosome transmission fidelity protein 1, at 423793 to 427312 11514 mRNA_3147: 11515 - Hypothetical Protein, at 427660 to 428214 11515 mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429143 to 430117 11516

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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426,921 - 11514 mRNA_3146 0.89 0.4
426,952 + 11514 mRNA_3146 0.90 -0.0
427,071 + 0.4
427,081 - 1.1
427,083 + 0.4
427,205 - 0.9
427,205 - -0.3
427,210 - 0.1
427,214 + 0.1
427,226 + 0.6
427,228 - 1.2
427,237 + -0.5
427,238 + 0.2
427,390 - -0.5
427,392 - 1.3
427,399 + 0.5
427,404 + -0.3
427,406 - -0.3
427,412 - 0.1
427,413 + -0.3
427,422 - -0.2
427,424 + -0.0
427,520 - 0.2
427,525 - 0.0
427,537 + 0.3
427,669 + -0.1
427,682 + -1.4
427,713 - 0.1
427,793 + 11515 mRNA_3147 0.24 0.2
427,812 - 11515 mRNA_3147 0.27 0.7
428,009 - 11515 mRNA_3147 0.63 0.1
428,074 - 11515 mRNA_3147 0.75 -0.1
428,288 + -1.1
428,409 + 0.6
428,688 + 1.5
428,699 + 0.1
428,702 + 0.6
428,707 + 0.8
428,798 - 0.4
428,799 + 1.4
428,829 - 0.2
428,855 + 0.5
428,867 - -0.2
429,000 - 0.0
429,009 + 0.6