Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3144

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415939 to 417358 11511 mRNA_3144: 11512 - Hypothetical Protein, at 417526 to 421368 11512 mRNA_3145: 11513 - HMMPfam-haloacid dehalogenase-like hydrolase-PF08282,SUPERFAMILY--SSF56784,TIGRFAM-Cof-subfamily Cof-like hydrolase-TIGR00099,TIGRFAM-HAD-SF-IIB HAD hydrolase, family IIB-TIGR01484, at 422365 to 423654 11513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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416,634 - 11511 mRNA_3143 0.49 -0.2
416,758 - 11511 mRNA_3143 0.58 0.0
416,791 + 11511 mRNA_3143 0.60 -0.1
416,807 + 11511 mRNA_3143 0.61 -0.5
416,884 - 11511 mRNA_3143 0.67 0.0
416,914 - 11511 mRNA_3143 0.69 -0.1
416,955 + 11511 mRNA_3143 0.72 -0.4
417,060 - 11511 mRNA_3143 0.79 -0.1
417,093 + 11511 mRNA_3143 0.81 0.6
417,095 + 11511 mRNA_3143 0.81 -0.2
417,197 - 11511 mRNA_3143 0.89 -0.3
417,214 + 11511 mRNA_3143 0.90 -0.4
417,228 - 0.8
417,239 + 0.8
417,250 - 0.1
417,378 - 0.6
417,383 - 0.5
417,385 + 0.1
417,392 - 0.6
417,392 + 0.5
417,395 - 0.1
417,396 - -0.5
417,396 - 0.4
417,398 - -0.3
417,402 - 0.3
417,405 + -0.1
417,423 + 0.5
417,427 + 0.2
417,431 - 0.5
417,436 - 0.3
417,446 - 1.1
417,449 - 1.3
417,454 + 0.4
417,462 + 0.0
417,463 + -0.6
417,478 + 1.1
417,495 - 0.2
417,557 + -1.0
417,576 + 0.6
417,607 - 0.6
417,609 + 0.5
417,616 - 0.2
417,776 - 0.2
417,777 + -0.2
417,955 + 11512 mRNA_3144 0.11 -0.4
418,097 - 11512 mRNA_3144 0.15 1.0
418,476 - 11512 mRNA_3144 0.25 0.1
419,024 - 11512 mRNA_3144 0.39 0.0
419,439 + 11512 mRNA_3144 0.50 1.6
420,002 + 11512 mRNA_3144 0.64 -1.3
420,178 - 11512 mRNA_3144 0.69 0.1
420,278 - 11512 mRNA_3144 0.72 0.4
420,296 - 11512 mRNA_3144 0.72 -0.0
420,432 + 11512 mRNA_3144 0.76 0.4
420,644 - 11512 mRNA_3144 0.81 0.9
420,740 + 11512 mRNA_3144 0.84 -0.6
420,845 - 11512 mRNA_3144 0.86 0.0
420,911 - 11512 mRNA_3144 0.88 2.3
420,952 + 11512 mRNA_3144 0.89 0.2
421,046 - -0.6
421,054 + 0.1
421,068 + 2.4
421,164 - 0.9
421,329 - 0.8
421,438 - 0.5
421,469 - 0.5
421,470 - 0.0
421,476 + 1.4
421,478 - 0.6
421,480 + 0.2
421,494 - -0.0
421,526 - 1.6
421,594 + 0.0
421,596 - 0.8
421,603 - 0.4
421,614 + 1.3
421,617 - 1.0
421,618 + 0.2
421,622 - -0.1
421,622 - 0.8
421,624 - 2.1
421,634 - 0.8
421,652 + -0.1
421,656 + -0.4
421,658 + -0.8
421,660 + 0.8
421,667 + 1.1
421,676 + -0.4
421,717 - 0.9
421,730 + 0.2
421,730 - 0.5
421,732 - 1.8
421,735 + 0.2
421,737 - 0.4
421,738 + -0.3
421,739 + 0.4
421,741 - -1.2
421,747 - -0.4
421,753 - -0.3
421,758 + -0.1
421,759 + 0.9
421,759 + 0.5
421,760 + 0.9
421,760 + 0.7
421,760 + -0.3
421,762 - 0.1
421,763 - -0.2
421,764 - 1.7
421,765 + 0.3
421,766 + 0.2
421,768 + 0.8
421,776 + 0.6
421,779 + 0.1
421,781 + 0.3
421,784 + 1.2
421,793 + 0.0
421,796 - 0.6
421,798 - 0.4
421,798 - 0.2
421,806 - -1.1
421,806 - -0.3
421,811 + 0.0
421,815 + 1.4
421,825 + 0.2
421,833 - -0.1
421,940 + 0.3
421,942 - -0.5
421,956 - -0.1
421,956 - 0.8
421,959 - 0.5
421,963 + -0.1
421,969 - -0.5
421,972 - -0.5
421,981 - -0.8
421,984 - 0.5
421,985 - -0.5
421,997 - 2.3
421,998 + 0.8
421,999 + -0.5
422,002 + 0.4
422,018 - 0.2
422,020 + 0.1
422,020 - -0.6
422,031 + -0.5
422,031 + 0.3
422,040 - 0.6
422,042 + 0.4
422,043 - 1.4
422,044 - -0.3
422,048 + 0.2
422,050 + -0.1
422,051 + 1.1
422,052 + -0.4
422,066 - -0.1
422,072 + 0.2
422,072 - 0.2
422,074 - 0.4
422,075 - -0.3
422,085 + 0.1
422,113 - 0.5
422,132 + 0.9
422,145 + 0.4
422,163 + -0.0
422,165 - -0.0
422,174 + 1.6
422,174 + 0.6
422,188 - -0.3
422,195 - -0.5
422,205 + -0.9
422,207 + 1.2
422,212 - 0.0
422,214 + -0.7
422,221 - 1.2
422,223 - -0.6
422,237 - -0.4
422,255 - 0.2
422,271 + 0.7
422,276 + 0.5
422,280 + 1.2
422,314 - 0.3
422,351 - 1.0
422,364 - -0.3