Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3121

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367437 to 369368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369378 to 369678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370199 to 371731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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368,502 + 11488 mRNA_3120 0.55 2.1
368,540 + 11488 mRNA_3120 0.57 0.2
368,552 + 11488 mRNA_3120 0.58 -0.2
368,665 - 11488 mRNA_3120 0.64 0.6
368,683 - 11488 mRNA_3120 0.64 0.5
368,698 + 11488 mRNA_3120 0.65 -1.1
368,809 - 11488 mRNA_3120 0.71 0.6
368,918 + 11488 mRNA_3120 0.77 0.7
368,966 + 11488 mRNA_3120 0.79 0.1
368,967 + 11488 mRNA_3120 0.79 -0.0
368,975 + 11488 mRNA_3120 0.80 -0.4
369,079 + 11488 mRNA_3120 0.85 0.2
369,090 + 11488 mRNA_3120 0.86 -1.5
369,227 - 0.6
369,231 - -2.2
369,236 - -0.9
369,237 - 0.0
369,239 + -0.0
369,268 - 0.0
369,302 + 0.1
369,370 - -1.0
369,372 - 0.4
369,394 + 0.4
369,402 - 1.5
369,521 - 11489 mRNA_3121 0.48 0.1
369,635 + 11489 mRNA_3121 0.85 -1.0
369,665 - 0.1
369,705 + 0.0
369,706 - 0.1
369,710 + -0.4
369,828 - 0.5
369,834 - 0.8
369,968 - -0.1
369,972 - 0.2
369,980 + -0.3
369,994 - -0.0
370,120 - -0.7
370,127 + 0.2
370,128 - 1.2
370,140 - 0.3
370,144 - 0.9
370,145 + 1.0
370,145 + 1.3
370,156 - 1.1
370,159 + -1.2
370,281 - 1.1
370,287 - 0.1
370,336 + 0.5
370,392 - 11490 mRNA_3122 0.13 2.5
370,581 - 11490 mRNA_3122 0.25 0.1