Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3120

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362785 to 367104 11487 mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367437 to 369368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369378 to 369678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370199 to 371731 11490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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366,560 + 11487 mRNA_3119 0.87 -1.2
366,566 + 11487 mRNA_3119 0.88 0.3
366,729 + 0.4
366,856 + -1.5
366,994 - 1.0
366,995 - 0.1
367,159 + -0.0
367,164 + -0.0
367,165 + 0.1
367,167 + -0.7
367,198 - 0.5
367,201 - -0.0
367,207 + 0.3
367,211 + 1.1
367,317 - 0.8
367,318 + -0.8
367,326 - 1.6
367,329 - 1.3
367,473 - -0.6
367,478 - 0.8
367,501 + -1.9
367,603 - -0.4
367,763 - 11488 mRNA_3120 0.17 0.1
367,924 - 11488 mRNA_3120 0.25 0.8
367,933 + 11488 mRNA_3120 0.26 1.1
367,936 + 11488 mRNA_3120 0.26 -0.5
367,990 - 11488 mRNA_3120 0.29 0.5
368,006 + 11488 mRNA_3120 0.29 1.8
368,074 - 11488 mRNA_3120 0.33 -0.1
368,208 + 11488 mRNA_3120 0.40 0.4
368,242 + 11488 mRNA_3120 0.42 1.5
368,341 + 11488 mRNA_3120 0.47 0.7
368,502 + 11488 mRNA_3120 0.55 2.1
368,540 + 11488 mRNA_3120 0.57 0.2
368,552 + 11488 mRNA_3120 0.58 -0.2
368,665 - 11488 mRNA_3120 0.64 0.6
368,683 - 11488 mRNA_3120 0.64 0.5
368,698 + 11488 mRNA_3120 0.65 -1.1
368,809 - 11488 mRNA_3120 0.71 0.6
368,918 + 11488 mRNA_3120 0.77 0.7
368,966 + 11488 mRNA_3120 0.79 0.1
368,967 + 11488 mRNA_3120 0.79 -0.0
368,975 + 11488 mRNA_3120 0.80 -0.4
369,079 + 11488 mRNA_3120 0.85 0.2
369,090 + 11488 mRNA_3120 0.86 -1.5
369,227 - 0.6
369,231 - -2.2
369,236 - -0.9
369,237 - 0.0
369,239 + -0.0
369,268 - 0.0
369,302 + 0.1
369,370 - -1.0
369,372 - 0.4
369,394 + 0.4
369,402 - 1.5
369,521 - 11489 mRNA_3121 0.48 0.1
369,635 + 11489 mRNA_3121 0.85 -1.0
369,665 - 0.1
369,705 + 0.0
369,706 - 0.1
369,710 + -0.4
369,828 - 0.5
369,834 - 0.8
369,968 - -0.1
369,972 - 0.2
369,980 + -0.3
369,994 - -0.0
370,120 - -0.7
370,127 + 0.2
370,128 - 1.2
370,140 - 0.3
370,144 - 0.9
370,145 + 1.0
370,145 + 1.3
370,156 - 1.1
370,159 + -1.2
370,281 - 1.1
370,287 - 0.1
370,336 + 0.5