Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3110

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477 mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346099 to 349205 11478 mRNA_3111: 11479 - K09788 prpF 2-methylaconitate isomerase, at 349482 to 350899 11479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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345,141 - 11477 mRNA_3109 0.40 0.1
345,142 + 11477 mRNA_3109 0.40 0.1
345,165 + 11477 mRNA_3109 0.41 1.1
345,306 - 11477 mRNA_3109 0.52 -0.4
345,430 - 11477 mRNA_3109 0.61 1.2
345,438 + 11477 mRNA_3109 0.62 1.0
345,473 - 11477 mRNA_3109 0.64 -0.2
345,581 + 11477 mRNA_3109 0.73 0.4
345,621 + 11477 mRNA_3109 0.76 -0.2
345,914 - 0.0
346,065 + 0.7
346,186 + -0.0
346,189 - 0.3
346,432 + 11478 mRNA_3110 0.11 1.0
346,452 - 11478 mRNA_3110 0.11 0.6
346,597 + 11478 mRNA_3110 0.16 -0.5
346,618 - 11478 mRNA_3110 0.17 0.1
346,666 - 11478 mRNA_3110 0.18 -1.2
346,700 - 11478 mRNA_3110 0.19 -0.4
346,757 + 11478 mRNA_3110 0.21 0.8
346,772 + 11478 mRNA_3110 0.22 0.2
346,798 - 11478 mRNA_3110 0.22 0.4
347,070 + 11478 mRNA_3110 0.31 0.3
347,081 - 11478 mRNA_3110 0.32 0.4
347,342 + 11478 mRNA_3110 0.40 0.0
347,359 - 11478 mRNA_3110 0.41 -0.6
347,366 + 11478 mRNA_3110 0.41 0.2
347,369 - 11478 mRNA_3110 0.41 0.4
347,598 + 11478 mRNA_3110 0.48 -0.2
347,612 + 11478 mRNA_3110 0.49 1.1
347,748 + 11478 mRNA_3110 0.53 -0.3
347,837 + 11478 mRNA_3110 0.56 0.7
347,937 + 11478 mRNA_3110 0.59 0.4
348,088 - 11478 mRNA_3110 0.64 1.7
348,109 + 11478 mRNA_3110 0.65 1.2
348,179 - 11478 mRNA_3110 0.67 1.0
348,257 + 11478 mRNA_3110 0.69 -0.4
348,527 - 11478 mRNA_3110 0.78 0.4
348,545 + 11478 mRNA_3110 0.79 0.9
348,708 + 11478 mRNA_3110 0.84 -1.0
348,714 + 11478 mRNA_3110 0.84 -0.7
348,991 + 0.7
348,994 - 0.0
349,093 - -0.0
349,126 - 0.3
349,139 + 1.3
349,279 + 0.3
349,282 - 0.1
349,284 - -0.4
349,306 - 0.4
349,428 - 0.2
349,442 - -1.0
349,450 - 0.2
349,468 + -0.2
349,565 - 0.6
349,590 - -0.3
349,597 + -0.0
349,650 - 11479 mRNA_3111 0.12 0.8
349,872 - 11479 mRNA_3111 0.28 -0.5
350,002 - 11479 mRNA_3111 0.37 0.2
350,009 + 11479 mRNA_3111 0.37 -0.1
350,032 + 11479 mRNA_3111 0.39 -0.1
350,158 - 11479 mRNA_3111 0.48 -0.0