Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3108

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339155 to 340730 11475 mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340842 to 344399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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339,885 - 11475 mRNA_3107 0.46 0.6
339,899 - 11475 mRNA_3107 0.47 0.0
340,066 - 11475 mRNA_3107 0.58 0.5
340,193 - 11475 mRNA_3107 0.66 0.7
340,195 - 11475 mRNA_3107 0.66 -0.2
340,288 - 11475 mRNA_3107 0.72 0.7
340,635 + 0.2
340,676 - 0.5
340,790 - 2.0
340,907 - 1.2
341,035 - 1.1
341,059 - -0.0
341,067 + 1.4
341,086 - -0.3
341,250 + 11476 mRNA_3108 0.11 0.4
341,659 + 11476 mRNA_3108 0.23 -0.4
341,682 + 11476 mRNA_3108 0.24 0.4
341,785 + 11476 mRNA_3108 0.27 2.1
341,810 - 11476 mRNA_3108 0.27 -0.0
342,229 + 11476 mRNA_3108 0.39 -1.8
342,398 + 11476 mRNA_3108 0.44 -0.2
342,416 - 11476 mRNA_3108 0.44 0.5
342,490 - 11476 mRNA_3108 0.46 0.1
342,511 + 11476 mRNA_3108 0.47 0.5
342,529 + 11476 mRNA_3108 0.47 0.8
342,802 - 11476 mRNA_3108 0.55 -0.6
342,827 + 11476 mRNA_3108 0.56 0.5
342,975 + 11476 mRNA_3108 0.60 -0.0
342,985 - 11476 mRNA_3108 0.60 1.0
343,106 - 11476 mRNA_3108 0.64 -0.2
343,277 + 11476 mRNA_3108 0.68 0.1
343,306 + 11476 mRNA_3108 0.69 1.4
343,565 + 11476 mRNA_3108 0.77 0.1
343,597 + 11476 mRNA_3108 0.77 -0.9
343,695 + 11476 mRNA_3108 0.80 -0.1
343,859 - 11476 mRNA_3108 0.85 0.7
344,002 - 11476 mRNA_3108 0.89 0.1
344,131 - -0.6
344,132 + 0.6
344,134 + -0.3
344,135 - 0.4
344,142 - -0.5
344,155 - 0.1
344,269 + -0.9
344,277 - 0.2
344,283 + 0.0
344,292 - 0.7
344,292 - 0.3
344,298 - 0.2
344,299 + -0.5
344,302 + -0.0
344,306 + 1.0
344,437 - 0.4
344,438 - 0.1
344,439 - -1.4
344,451 - -0.2
344,451 + 0.9
344,457 + 0.8
344,457 - 0.3
344,458 + 0.4
344,549 - -0.4
344,575 - -0.7
344,575 + 0.5
344,582 - 0.4
344,584 - -0.0
344,586 - 0.2
344,588 - 0.5
344,589 + -0.6
344,595 - 0.8
344,596 + 0.6
344,603 + 1.2
344,614 + -0.6
344,733 - 0.0
344,741 + 0.2
344,746 - 0.2
344,749 + 11477 mRNA_3109 0.10 0.1
344,864 - 11477 mRNA_3109 0.19 -0.2
344,872 - 11477 mRNA_3109 0.19 -0.0
344,875 + 11477 mRNA_3109 0.20 -0.7
344,901 + 11477 mRNA_3109 0.22 -0.6
345,007 - 11477 mRNA_3109 0.30 -0.3
345,018 + 11477 mRNA_3109 0.30 -0.3
345,042 + 11477 mRNA_3109 0.32 0.3
345,060 - 11477 mRNA_3109 0.33 0.1
345,141 - 11477 mRNA_3109 0.40 0.1
345,142 + 11477 mRNA_3109 0.40 0.1
345,165 + 11477 mRNA_3109 0.41 1.1
345,306 - 11477 mRNA_3109 0.52 -0.4