Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3088

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289552 to 290619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290812 to 293862 11456 mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293855 to 294427 11457

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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289,983 + 11455 mRNA_3087 0.40 -0.7
290,096 + 11455 mRNA_3087 0.51 0.3
290,119 + 11455 mRNA_3087 0.53 0.8
290,295 - 11455 mRNA_3087 0.70 2.3
290,411 - 11455 mRNA_3087 0.80 0.4
290,435 + 11455 mRNA_3087 0.83 0.5
290,443 + 11455 mRNA_3087 0.83 1.0
290,452 + 11455 mRNA_3087 0.84 0.7
290,542 - 0.6
290,551 + 0.1
290,561 - 1.0
290,565 + -1.6
290,570 - 1.1
290,573 + -0.8
290,576 + -0.5
290,581 + 0.5
290,620 - -0.0
290,622 + -0.4
290,647 - -0.2
290,657 - 0.9
290,659 + 0.3
290,660 + -1.3
290,663 - 0.1
290,665 - 0.1
290,667 + 0.4
290,667 - -0.1
290,676 + 1.1
290,685 + 0.1
290,686 - 1.3
290,686 - 0.2
290,687 - 1.1
290,689 + -1.1
290,689 + 1.1
290,689 + 1.4
290,690 - 0.3
290,693 - 0.1
290,694 + -0.7
290,699 - -0.1
290,706 + 0.4
290,706 + 0.6
290,707 - 0.3
290,711 - 0.2
290,717 + 0.2
290,735 - 0.6
290,742 + 0.0
290,742 + 1.7
290,745 + 0.2
290,839 + 0.6
290,858 + -0.4
290,858 - 0.3
290,866 - 0.2
290,905 - 0.7
290,905 - -0.8
290,910 - 0.3
290,915 + -1.1
291,012 - 0.2
291,027 + 0.9
291,110 + 0.2
291,160 + 11456 mRNA_3088 0.11 -0.3
291,310 - 11456 mRNA_3088 0.16 1.8
291,457 + 11456 mRNA_3088 0.21 0.3
291,467 + 11456 mRNA_3088 0.21 0.5
291,745 + 11456 mRNA_3088 0.31 0.1
291,765 + 11456 mRNA_3088 0.31 -0.3
291,896 - 11456 mRNA_3088 0.36 -0.5
291,934 + 11456 mRNA_3088 0.37 -1.0
292,218 + 11456 mRNA_3088 0.46 0.3
292,365 + 11456 mRNA_3088 0.51 -0.3
292,577 - 11456 mRNA_3088 0.58 -0.1
292,673 + 11456 mRNA_3088 0.61 0.1
292,916 - 11456 mRNA_3088 0.69 0.8
292,917 + 11456 mRNA_3088 0.69 -0.6
293,056 - 11456 mRNA_3088 0.74 0.9
293,073 + 11456 mRNA_3088 0.74 0.1
293,362 + 11456 mRNA_3088 0.84 -0.2
293,477 - 11456 mRNA_3088 0.87 0.2
294,052 - 11457 mRNA_3089 0.34 -0.9
294,064 - 11457 mRNA_3089 0.36 1.5
294,079 + 11457 mRNA_3089 0.39 1.9
294,167 + 11457 mRNA_3089 0.54 0.6
294,209 - 11457 mRNA_3089 0.62 1.5
294,360 - 11457 mRNA_3089 0.88 1.0
294,390 + 0.7
294,391 - 0.6
294,542 - -0.4
294,550 + 0.3
294,550 - 0.6
294,550 - 0.8
294,557 + -0.8
294,562 + 0.2
294,563 + 0.6
294,564 - -0.1
294,567 - -0.2
294,595 + 0.9
294,596 - -0.0
294,819 - 0.3
294,833 - 0.1
294,847 + 1.6