Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3081

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448 mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274779 to 278054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278441 to 278932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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273,830 + 11448 mRNA_3080 0.83 0.2
273,833 + 11448 mRNA_3080 0.83 -0.6
273,934 + 11448 mRNA_3080 0.90 1.9
274,113 + 0.8
274,113 + 0.0
274,122 + 0.2
274,246 + -0.5
274,257 + 0.2
274,259 + 1.4
274,259 - -0.5
274,267 + 0.5
274,272 + 0.4
274,273 + -0.5
274,284 + 0.6
274,285 - 0.3
274,285 - 0.4
274,286 - 0.5
274,295 + 1.3
274,295 + 0.3
274,296 - -0.1
274,301 + -0.5
274,332 + 0.5
274,356 - -0.3
274,357 + -1.2
274,357 + 0.8
274,393 - 0.3
274,393 - -0.0
274,413 + 0.1
274,417 + 0.3
274,421 - -0.3
274,433 - -1.2
274,437 + -0.2
274,452 + 0.7
274,452 - -0.3
274,536 + 0.2
274,542 - 0.8
274,545 + 0.9
274,568 - 1.8
274,587 + 0.5
274,695 + 0.1
274,697 + -0.5
274,807 + 0.3
274,815 - 0.2
274,827 - 0.2
274,836 - -0.8
274,867 - -0.3
274,952 - 0.1
274,983 - 1.0
275,000 + 0.6
275,119 + 11449 mRNA_3081 0.10 0.3
275,119 + 11449 mRNA_3081 0.10 0.6
275,172 + 11449 mRNA_3081 0.12 -0.7
275,263 + 11449 mRNA_3081 0.15 0.7
275,329 + 11449 mRNA_3081 0.17 0.2
275,479 + 11449 mRNA_3081 0.21 0.7
275,557 - 11449 mRNA_3081 0.24 -0.2
275,587 + 11449 mRNA_3081 0.25 0.6
275,610 + 11449 mRNA_3081 0.25 1.2
275,734 - 11449 mRNA_3081 0.29 0.8
275,884 + 11449 mRNA_3081 0.34 0.4
275,887 + 11449 mRNA_3081 0.34 0.1
276,035 + 11449 mRNA_3081 0.38 -0.3
276,143 - 11449 mRNA_3081 0.42 0.1
276,173 + 11449 mRNA_3081 0.43 0.7
276,207 + 11449 mRNA_3081 0.44 0.3
276,213 - 11449 mRNA_3081 0.44 -1.2
276,311 - 11449 mRNA_3081 0.47 -0.1
276,492 + 11449 mRNA_3081 0.52 -0.2
276,495 - 11449 mRNA_3081 0.52 1.2
276,592 + 11449 mRNA_3081 0.55 1.6
276,619 - 11449 mRNA_3081 0.56 0.5
276,621 - 11449 mRNA_3081 0.56 0.5
276,622 - 11449 mRNA_3081 0.56 0.6
276,651 + 11449 mRNA_3081 0.57 -0.4
276,751 - 11449 mRNA_3081 0.60 0.1
276,764 - 11449 mRNA_3081 0.61 -0.1
276,771 - 11449 mRNA_3081 0.61 -0.6
276,777 + 11449 mRNA_3081 0.61 0.4
276,790 + 11449 mRNA_3081 0.61 0.1
276,815 + 11449 mRNA_3081 0.62 0.2
277,210 + 11449 mRNA_3081 0.74 0.4
277,221 - 11449 mRNA_3081 0.75 -0.1
277,232 - 11449 mRNA_3081 0.75 0.3
277,241 - 11449 mRNA_3081 0.75 0.1
277,595 + 11449 mRNA_3081 0.86 1.4
277,644 + 11449 mRNA_3081 0.87 0.1
277,673 + 11449 mRNA_3081 0.88 0.2
277,681 - 11449 mRNA_3081 0.89 0.5
277,797 + 0.7
277,797 - 0.1
277,824 + -0.5
277,835 - 0.6
277,836 + 0.3
277,842 + -0.0
277,933 - 2.2
277,960 - 0.6
277,981 + 2.3
277,985 + -0.3
278,083 - -0.1
278,105 - 0.5
278,108 + 0.3
278,135 - 0.6
278,138 + 1.2
278,246 - 0.4
278,263 - 0.4
278,264 - 0.6
278,293 + 0.2
278,402 + 0.0
278,557 - 11450 mRNA_3082 0.24 0.1
278,558 - 11450 mRNA_3082 0.24 -0.7
278,565 + 11450 mRNA_3082 0.25 -1.4
278,568 - 11450 mRNA_3082 0.26 0.3
278,704 + 11450 mRNA_3082 0.53 -0.4
278,871 + 11450 mRNA_3082 0.87 0.6
278,986 - -0.1
278,990 - 0.0