Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3060

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3059: 11427 - Hypothetical Protein, at 217589 to 219191 11427 mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219691 to 221317 11428 mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221802 to 224881 11429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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218,747 + 11427 mRNA_3059 0.72 0.6
218,798 - 11427 mRNA_3059 0.75 -0.7
218,892 - 11427 mRNA_3059 0.81 -1.3
218,996 + 11427 mRNA_3059 0.88 -0.5
219,037 + 0.2
219,182 - 0.1
219,183 - -0.3
219,309 - 0.3
219,330 - -0.4
219,331 - -0.1
219,346 - 0.6
219,346 - -1.0
219,347 + 1.4
219,451 - -0.0
219,453 + 1.1
219,467 - 1.1
219,484 - -0.3
219,501 - 0.2
219,513 + -2.1
219,624 - -0.3
219,630 + 0.2
219,630 + 0.3
219,637 + 1.0
219,639 + -0.2
219,753 - 0.4
219,759 - 0.0
219,763 + -0.1
219,765 - -0.1
219,768 - 0.7
219,773 + 0.3
219,780 - 0.5
219,902 - 11428 mRNA_3060 0.13 0.2
219,902 - 11428 mRNA_3060 0.13 1.2
219,903 + 11428 mRNA_3060 0.13 0.3
219,908 + 11428 mRNA_3060 0.13 -1.2
219,931 + 11428 mRNA_3060 0.15 0.4
220,038 - 11428 mRNA_3060 0.21 0.7
220,082 + 11428 mRNA_3060 0.24 0.4
220,477 - 11428 mRNA_3060 0.48 1.2
220,584 - 11428 mRNA_3060 0.55 0.1
220,591 + 11428 mRNA_3060 0.55 0.8
220,592 + 11428 mRNA_3060 0.55 -1.6
220,599 - 11428 mRNA_3060 0.56 0.1
221,253 + -0.4
221,380 - 0.8
221,387 + -0.6
221,397 + -0.5
221,489 - 0.4
221,818 + -0.3
221,962 + 1.4
222,113 + 11429 mRNA_3061 0.10 0.9
222,222 - 11429 mRNA_3061 0.14 0.5
222,241 - 11429 mRNA_3061 0.14 0.9
222,268 - 11429 mRNA_3061 0.15 1.3