Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212271 to 214660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214961 to 216563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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213,989 - 11425 mRNA_3057 0.72 0.4
213,994 + 11425 mRNA_3057 0.72 0.1
214,072 + 11425 mRNA_3057 0.75 0.8
214,224 - 11425 mRNA_3057 0.82 0.8
214,238 - 11425 mRNA_3057 0.82 0.9
214,243 + 11425 mRNA_3057 0.83 0.7
214,523 + 0.0
214,665 + -0.3
214,696 + 0.2
214,932 + 0.0
214,987 + 0.2
214,988 + 0.2
215,019 + 0.7
215,262 - 11426 mRNA_3058 0.19 0.4
215,363 - 11426 mRNA_3058 0.25 0.0
215,509 + 11426 mRNA_3058 0.34 0.9
215,589 - 11426 mRNA_3058 0.39 2.3
215,589 - 11426 mRNA_3058 0.39 1.5
215,589 - 11426 mRNA_3058 0.39 0.1
215,589 - 11426 mRNA_3058 0.39 0.8
215,595 + 11426 mRNA_3058 0.40 0.3
215,643 + 11426 mRNA_3058 0.43 0.3
215,766 + 11426 mRNA_3058 0.50 0.1
215,766 - 11426 mRNA_3058 0.50 -1.1
215,839 - 11426 mRNA_3058 0.55 1.2
215,842 - 11426 mRNA_3058 0.55 -1.1
215,866 + 11426 mRNA_3058 0.56 1.2
215,905 - 11426 mRNA_3058 0.59 1.8
216,117 + 11426 mRNA_3058 0.72 1.0
216,133 - 11426 mRNA_3058 0.73 1.5
216,179 - 11426 mRNA_3058 0.76 0.8
216,189 - 11426 mRNA_3058 0.77 -0.1
216,191 - 11426 mRNA_3058 0.77 0.4
216,234 - 11426 mRNA_3058 0.79 -0.0
216,271 - 11426 mRNA_3058 0.82 1.3
216,345 - 11426 mRNA_3058 0.86 0.2
216,395 - 11426 mRNA_3058 0.89 0.4
216,443 + -1.1
216,446 - 0.2
216,449 + 0.4
216,569 + 0.8
216,570 + 0.4
216,674 + -0.0
216,742 + 0.3
216,837 - 2.2
216,865 - 0.1
216,868 - 0.0
216,879 + 0.1
216,882 + 0.8
216,884 - -0.4
217,004 + 0.8
217,009 - 0.8
217,011 - 0.6
217,029 - 0.1
217,032 + 1.2
217,035 - -0.8
217,037 + 0.4
217,038 + -0.1
217,045 - 0.6
217,152 - 1.7
217,173 + 0.3
217,193 + 0.9
217,252 - 0.4
217,317 + 1.5
217,461 - 0.9
217,464 + 0.1
217,470 - -0.1
217,470 - 0.4
217,475 + -0.0