Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3030

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134923 to 137066 11397 mRNA_3030: 11398 - Hypothetical Protein, at 137392 to 137958 11398 mRNA_3031: 11399 - KOG0527 HMG-box transcription factor, at 138430 to 140039 11399

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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136,530 - 11397 mRNA_3029 0.75 0.5
136,541 + 11397 mRNA_3029 0.75 2.1
136,674 + 11397 mRNA_3029 0.82 -0.8
136,697 + 11397 mRNA_3029 0.83 0.1
136,822 + 11397 mRNA_3029 0.89 0.6
136,965 - 1.4
136,983 - 0.7
137,111 + 0.7
137,122 + -0.2
137,123 + 0.5
137,123 - 0.1
137,135 - 0.9
137,142 + 0.0
137,146 + 0.9
137,147 + -0.3
137,279 - 0.2
137,298 - -0.3
137,304 + 0.7
137,325 - 0.3
137,420 - 0.7
137,429 + -0.0
137,467 - 11398 mRNA_3030 0.13 0.5
137,521 - 11398 mRNA_3030 0.23 0.8
137,566 - 11398 mRNA_3030 0.31 1.3
137,864 - 11398 mRNA_3030 0.83 -0.0
137,872 - 11398 mRNA_3030 0.85 1.2
137,882 - 11398 mRNA_3030 0.86 -0.1
137,918 + 0.3
138,012 - -0.0