Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3028

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3027: 11395 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 130169 to 132601 11395 mRNA_3028: 11396 - Hypothetical Protein, at 132999 to 134584 11396 mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134923 to 137066 11397

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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132,691 - 0.4
132,725 - -1.0
132,729 - 0.3
132,743 - 0.4
132,743 - 0.9
132,754 - 0.1
132,756 + 0.1
132,851 - -0.6
132,866 - -0.4
132,869 + -0.2
132,874 + 0.0
132,874 + 0.6
132,876 - -0.1
132,883 - 0.3
132,888 + 0.1
132,888 - -0.5
132,892 + 0.7
132,896 + -0.7
132,907 - 1.3
132,908 - 0.3
132,908 + -0.3
132,909 - 0.4
132,916 + 1.6
132,921 - -0.6
132,921 - -0.2
132,923 + 0.3
133,022 - 0.0
133,061 - 1.4
133,063 - 1.2
133,071 + 0.6
133,080 + 0.3
133,201 + 11396 mRNA_3028 0.13 -0.2
133,209 + 11396 mRNA_3028 0.13 -1.9
133,214 - 11396 mRNA_3028 0.14 0.6
133,222 + 11396 mRNA_3028 0.14 0.4
133,332 - 11396 mRNA_3028 0.21 1.3
133,332 - 11396 mRNA_3028 0.21 0.2
133,340 - 11396 mRNA_3028 0.22 1.0
133,342 - 11396 mRNA_3028 0.22 0.1
133,357 + 11396 mRNA_3028 0.23 0.3
133,357 + 11396 mRNA_3028 0.23 0.6
133,438 + 11396 mRNA_3028 0.28 0.5
133,518 - 11396 mRNA_3028 0.33 0.7
133,638 - 11396 mRNA_3028 0.40 0.9
134,275 + 11396 mRNA_3028 0.80 1.0
134,286 + 11396 mRNA_3028 0.81 0.0
134,586 - -0.0
134,616 - -0.0
134,641 - -0.1
134,649 + 0.7
134,808 - 1.9
134,828 + 1.2
134,904 + -0.4
134,917 + 1.4
134,919 + -1.1
134,926 - 0.1
135,245 - 11397 mRNA_3029 0.15 0.9
135,392 + 11397 mRNA_3029 0.22 -0.0
135,514 + 11397 mRNA_3029 0.28 0.6