Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2980

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2980: 11348 - KOG3140 Predicted membrane protein, at 23 to 1444 11348

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1 + -0.1
1 + 0.2
1 + 1.8
21 + 0.7
21 + -0.1
21 + -0.1
41 + -0.1
42 + 0.2
44 + 0.2
79 - -0.1
79 + 0.4
149 - -0.9
264 + 11348 mRNA_2980 0.17 0.5
266 - 11348 mRNA_2980 0.17 -0.1
338 - 11348 mRNA_2980 0.22 0.2
341 + 11348 mRNA_2980 0.22 0.6
454 - 11348 mRNA_2980 0.30 -0.4
484 - 11348 mRNA_2980 0.32 -0.3
489 - 11348 mRNA_2980 0.33 0.2
491 + 11348 mRNA_2980 0.33 0.3
507 + 11348 mRNA_2980 0.34 0.4
510 + 11348 mRNA_2980 0.34 -0.1
516 - 11348 mRNA_2980 0.35 0.3
654 + 11348 mRNA_2980 0.44 0.2
719 + 11348 mRNA_2980 0.49 1.5
1,007 + 11348 mRNA_2980 0.69 0.3
1,048 - 11348 mRNA_2980 0.72 0.3
1,218 - 11348 mRNA_2980 0.84 0.5
1,248 + 11348 mRNA_2980 0.86 0.8
1,364 + 0.8
1,374 - 0.3
1,401 + 0.3
1,452 + -1.3
1,488 - 0.1
1,503 + 0.2
1,513 + 0.3
1,515 - 0.3
1,551 + 0.6
1,634 + 0.4
1,635 + 0.5
1,657 + 1.3
1,668 + 0.1
1,805 - 1.1
1,805 + 1.0
1,818 + 0.4
1,882 + 0.2
1,934 + 1.4
1,948 + 0.6
1,949 - 0.1
1,974 + 0.3
1,992 + 0.6
1,992 + -0.4
1,993 + -0.3
2,011 + -0.0
2,082 + -0.1
2,084 - 0.6
2,086 + -0.1
2,086 + 0.6
2,086 + 1.0
2,095 + -0.5
2,097 - -1.3
2,098 + -0.3
2,115 + 0.1
2,117 + 0.6
2,120 + 0.6
2,121 - -0.1
2,121 - 0.3
2,125 - -0.1
2,126 + -0.4
2,131 + -0.3
2,131 + 1.8
2,131 + 1.2
2,133 + -0.1
2,243 + -0.0
2,265 + -0.3
2,301 + 0.9
2,320 + 0.3
2,324 - 0.4
2,357 + 0.3