Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2961

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2960: 11328 - KOG2617 Citrate synthase, at 653159 to 654002 11328 mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654993 to 657914 11329 mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658359 to 659860 11330

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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654,382 + 0.6
654,495 - 1.5
654,517 - 0.1
654,672 + -0.3
654,931 - 0.2
654,942 + 0.5
655,078 + -0.8
655,367 - 11329 mRNA_2961 0.13 0.9
655,383 + 11329 mRNA_2961 0.13 0.7
655,997 + 11329 mRNA_2961 0.34 -1.1
656,285 - 11329 mRNA_2961 0.44 1.7
656,581 - 11329 mRNA_2961 0.54 -0.5
656,705 + 11329 mRNA_2961 0.59 -0.8
656,827 - 11329 mRNA_2961 0.63 -0.2
656,842 + 11329 mRNA_2961 0.63 1.6
657,278 + 11329 mRNA_2961 0.78 0.4
657,291 - 11329 mRNA_2961 0.79 -1.1
657,339 - 11329 mRNA_2961 0.80 -0.9
657,402 - 11329 mRNA_2961 0.82 0.8
657,470 - 11329 mRNA_2961 0.85 0.5
657,599 + 11329 mRNA_2961 0.89 0.5
657,740 - 0.8
657,876 + 0.1
657,889 + 0.8
657,890 + -0.3
658,044 + 0.0
658,120 + 0.4
658,129 - 0.8
658,174 - 0.3
658,175 + 0.8
658,193 - -0.2
658,294 + 1.1
658,297 - 0.6
658,344 - 0.5
658,506 - 0.7
658,513 - 11330 mRNA_2962 0.10 -0.4
658,587 - 11330 mRNA_2962 0.15 0.1
658,595 + 11330 mRNA_2962 0.16 -0.3
658,645 + 11330 mRNA_2962 0.19 -0.1
658,791 - 11330 mRNA_2962 0.29 0.8
658,886 + 11330 mRNA_2962 0.35 -1.1