Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2884

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2883: 11251 - K16675 ZDHHC9_14_18 palmitoyltransferase ZDHHC9/14/18, at 445200 to 447494 11251 mRNA_2884: 11252 - K10838 XPC xeroderma pigmentosum group C-complementing protein, at 447802 to 451973 11252 mRNA_2885: 11253 - K20246 EGT1 L-histidine Nalpha-methyltransferase / hercynylcysteine S-oxide synthase, at 452122 to 455835 11253

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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447,014 - 11251 mRNA_2883 0.79 0.4
447,118 + 11251 mRNA_2883 0.84 1.5
447,123 - 11251 mRNA_2883 0.84 -0.3
447,423 - 0.5
447,430 + 0.2
447,586 - -0.2
447,597 + -0.1
447,723 + -0.2
447,748 + 0.2
447,872 + 0.3
447,890 + 1.5
447,985 - 1.4
448,040 + 1.4
448,320 + 11252 mRNA_2884 0.12 0.3
448,329 + 11252 mRNA_2884 0.13 0.8
448,753 - 11252 mRNA_2884 0.23 1.1
449,318 - 11252 mRNA_2884 0.36 0.2
449,331 - 11252 mRNA_2884 0.37 1.4
449,665 + 11252 mRNA_2884 0.45 0.1
449,724 - 11252 mRNA_2884 0.46 1.6
449,753 + 11252 mRNA_2884 0.47 -0.3
449,807 - 11252 mRNA_2884 0.48 0.1
450,349 - 11252 mRNA_2884 0.61 -0.7
450,655 - 11252 mRNA_2884 0.68 -0.2
450,672 - 11252 mRNA_2884 0.69 0.0
450,834 + 11252 mRNA_2884 0.73 1.0
451,256 - 11252 mRNA_2884 0.83 0.2
451,331 + 11252 mRNA_2884 0.85 -0.1
451,381 - 11252 mRNA_2884 0.86 -0.3
451,416 - 11252 mRNA_2884 0.87 0.3
451,782 - 0.2
452,113 + 0.4
452,154 + 0.1
452,154 + 0.1
452,264 - 0.5
452,269 + 0.3