Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2878

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2877: 11245 - Hypothetical Protein, at 429678 to 431024 11245 mRNA_2878: 11246 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 431152 to 434004 11246 mRNA_2879: 11247 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 434192 to 435080 11247

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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430,225 + 11245 mRNA_2877 0.41 2.1
430,330 + 11245 mRNA_2877 0.48 -0.8
430,497 + 11245 mRNA_2877 0.61 0.4
430,563 + 11245 mRNA_2877 0.66 0.3
431,154 - 0.3
431,229 + -1.5
431,454 - 11246 mRNA_2878 0.11 -0.0
431,571 - 11246 mRNA_2878 0.15 -0.3
431,591 + 11246 mRNA_2878 0.15 -0.4
432,021 + 11246 mRNA_2878 0.30 0.3
432,179 + 11246 mRNA_2878 0.36 0.4
432,412 - 11246 mRNA_2878 0.44 0.2
432,600 - 11246 mRNA_2878 0.51 1.5
432,618 + 11246 mRNA_2878 0.51 1.3
432,707 + 11246 mRNA_2878 0.55 0.5
432,854 + 11246 mRNA_2878 0.60 0.3
433,091 + 11246 mRNA_2878 0.68 0.2
433,200 - 11246 mRNA_2878 0.72 0.2
433,300 + 11246 mRNA_2878 0.75 0.7
433,340 - 11246 mRNA_2878 0.77 0.1
433,444 - 11246 mRNA_2878 0.80 0.1
433,619 + 11246 mRNA_2878 0.86 0.3
433,619 + 11246 mRNA_2878 0.86 0.1
433,768 + 0.5
433,777 + 0.8
433,879 + -0.0
433,900 - 0.3
433,909 + 0.9
433,923 - -0.2
434,033 + 0.7
434,112 - -0.7
434,119 + 0.9
434,120 + 0.3
434,120 - -0.3
434,130 - 0.4
434,243 + 0.5
434,295 - 11247 mRNA_2879 0.12 1.0
434,697 - 11247 mRNA_2879 0.57 1.0
434,890 - 11247 mRNA_2879 0.79 0.3