Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2847

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2846: 11214 - KOG3100 Uncharacterized conserved protein, at 349966 to 351384 11214 mRNA_2847: 11215 - ProSitePatterns-Zinc finger RING-type signature.-PS00518, at 351577 to 353493 11215 mRNA_2848: 11216 - HMMPfam-GMC oxidoreductase-PF00732,HMMPfam-GMC oxidoreductase-PF05199,PIRSF--PIRSF000137,ProSitePatterns-GMC oxidoreductases signature 2.-PS00624,SUPERFAMILY--SSF51905,SUPERFAMILY--SSF54373, at 354444 to 356897 11216

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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351,420 + -1.2
352,105 - 11215 mRNA_2847 0.28 0.5
352,114 - 11215 mRNA_2847 0.28 -0.1
352,188 - 11215 mRNA_2847 0.32 0.4
352,226 + 11215 mRNA_2847 0.34 0.2
352,231 - 11215 mRNA_2847 0.34 -0.9
352,563 - 11215 mRNA_2847 0.51 0.2
352,612 + 11215 mRNA_2847 0.54 0.0
353,366 - 0.1
353,644 - -0.0
353,672 + 0.5
353,951 + -0.3
353,956 - 1.6
353,957 - 0.2
353,966 - -0.9
353,970 - -0.1
353,990 + 0.2
354,300 - 2.2
354,327 + 2.5