Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2818

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2817: 11185 - KOG2946 Uncharacterized conserved protein, at 290103 to 291394 11185 mRNA_2818: 11186 - K02178 BUB1 checkpoint serine/threonine-protein kinase, at 292080 to 296876 11186 mRNA_2819: 11187 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SUPERFAMILY--SSF46785, at 297100 to 297771 11187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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291,290 + 0.2
291,318 + 0.1
291,342 - 0.2
291,457 - -1.4
291,594 + -0.6
291,610 + 0.1
291,612 - 0.2
291,613 + 0.1
291,888 - -1.1
291,888 - -0.0
292,634 - 11186 mRNA_2818 0.12 -0.3
294,611 + 11186 mRNA_2818 0.53 0.4
295,467 - 11186 mRNA_2818 0.71 0.2
296,160 - 11186 mRNA_2818 0.85 -0.3
296,871 + 1.9
296,989 - -1.3
297,018 + -0.0
297,018 - -0.2
297,436 - 11187 mRNA_2819 0.50 1.0
297,439 - 11187 mRNA_2819 0.50 -0.2
297,456 + 11187 mRNA_2819 0.53 0.7
297,479 + 11187 mRNA_2819 0.56 0.6
297,862 + 0.9