Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2769

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2768: 11136 - K08681 pdxT, pdx2 5'-phosphate synthase pdxT subunit, at 170479 to 171341 11136 mRNA_2769: 11137 - K06215 pdxS, pdx1 pyridoxal 5'-phosphate synthase pdxS subunit, at 171565 to 173167 11137 mRNA_2770: 11138 - KOG0400 40S ribosomal protein S13, at 173510 to 175017 11138

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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170,669 - 11136 mRNA_2768 0.22 0.4
170,811 - 11136 mRNA_2768 0.38 -1.6
170,952 + 11136 mRNA_2768 0.55 -0.1
170,988 + 11136 mRNA_2768 0.59 0.7
171,119 - 11136 mRNA_2768 0.74 0.5
171,267 - 0.1
171,300 + -0.6
171,440 - 1.4
171,444 - -0.1
171,478 + 0.0
171,644 + 0.9
171,646 + 0.6
171,647 - -0.3
171,669 - -0.8
171,778 + 11137 mRNA_2769 0.13 0.7
171,787 - 11137 mRNA_2769 0.14 -0.1
171,920 - 11137 mRNA_2769 0.22 -0.2
171,928 + 11137 mRNA_2769 0.23 0.2
172,075 + 11137 mRNA_2769 0.32 1.6
172,216 + 11137 mRNA_2769 0.41 -0.5
172,216 - 11137 mRNA_2769 0.41 -0.2
172,217 + 11137 mRNA_2769 0.41 0.2
172,389 + 11137 mRNA_2769 0.51 0.2
172,477 - 11137 mRNA_2769 0.57 0.6
172,514 + 11137 mRNA_2769 0.59 -0.2
172,527 - 11137 mRNA_2769 0.60 0.5
172,530 + 11137 mRNA_2769 0.60 1.7
172,661 - 11137 mRNA_2769 0.68 0.3
172,670 - 11137 mRNA_2769 0.69 0.8
172,702 + 11137 mRNA_2769 0.71 0.3
172,706 + 11137 mRNA_2769 0.71 0.9
172,706 - 11137 mRNA_2769 0.71 1.5
172,722 - 11137 mRNA_2769 0.72 -1.1
172,723 + 11137 mRNA_2769 0.72 -0.4
172,790 - 11137 mRNA_2769 0.76 -0.4
172,816 + 11137 mRNA_2769 0.78 2.1
172,817 - 11137 mRNA_2769 0.78 1.3
172,825 - 11137 mRNA_2769 0.79 1.2
172,827 + 11137 mRNA_2769 0.79 0.8
172,834 - 11137 mRNA_2769 0.79 0.1
172,899 - 11137 mRNA_2769 0.83 0.1
172,921 - 11137 mRNA_2769 0.85 -0.0
172,969 - 11137 mRNA_2769 0.88 -0.3
172,976 - 11137 mRNA_2769 0.88 0.2
172,978 + 11137 mRNA_2769 0.88 0.4
172,979 + 11137 mRNA_2769 0.88 0.3
173,102 - 0.6
173,198 + 2.5
173,234 - 1.9
173,570 - 1.5
174,062 - 11138 mRNA_2770 0.37 0.2
174,127 + 11138 mRNA_2770 0.41 0.7
174,165 + 11138 mRNA_2770 0.43 1.1