Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2733

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2732: 11100 - Hypothetical Protein, at 95429 to 95692 11100 mRNA_2733: 11101 - KOG0254 Predicted transporter (major facilitator superfamily), at 95902 to 98475 11101 mRNA_2734: 11102 - K14779 DDX52, ROK1 ATP-dependent RNA helicase DDX52/ROK1, at 98768 to 101128 11102

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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95,055 + 0.0
95,164 - -0.6
95,167 - 2.7
95,169 + 0.1
95,177 + 0.4
95,190 + -0.6
95,247 + 0.6
95,285 - 0.9
95,352 + 0.4
95,461 + 11100 mRNA_2732 0.12 0.2
95,497 - 11100 mRNA_2732 0.26 0.6
95,508 - 11100 mRNA_2732 0.30 -0.3
95,513 + 11100 mRNA_2732 0.32 0.9
95,525 + 11100 mRNA_2732 0.36 0.0
95,539 - 11100 mRNA_2732 0.42 0.1
95,552 + 11100 mRNA_2732 0.47 0.3
95,688 - 0.9
95,692 + 1.1
95,707 + 0.6
95,710 + -0.4
95,765 - 0.2
95,891 - 1.3
95,941 - -1.3
96,187 - 11101 mRNA_2733 0.11 0.7
96,190 - 11101 mRNA_2733 0.11 -0.0
96,215 - 11101 mRNA_2733 0.12 0.2
96,682 + 11101 mRNA_2733 0.30 0.7
96,970 - 11101 mRNA_2733 0.41 -0.1
97,330 - 11101 mRNA_2733 0.55 0.2
97,556 + 11101 mRNA_2733 0.64 0.5
97,561 + 11101 mRNA_2733 0.64 -0.5
97,583 - 11101 mRNA_2733 0.65 -0.5
97,706 + 11101 mRNA_2733 0.70 1.7
97,830 - 11101 mRNA_2733 0.75 0.3
97,920 - 11101 mRNA_2733 0.78 -0.2
97,925 + 11101 mRNA_2733 0.79 0.4
97,928 - 11101 mRNA_2733 0.79 -0.1
97,958 - 11101 mRNA_2733 0.80 0.6
97,965 + 11101 mRNA_2733 0.80 0.5
97,972 + 11101 mRNA_2733 0.80 0.3
97,979 + 11101 mRNA_2733 0.81 0.1
97,986 + 11101 mRNA_2733 0.81 -1.4
98,034 + 11101 mRNA_2733 0.83 -0.2
98,248 - 0.4
98,251 + 0.6
98,450 + -0.4
98,582 + 0.4
98,709 + 0.3
98,839 + 0.3