Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2705

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2704: 11072 - SUPERFAMILY--SSF54695, at 44136 to 45724 11072 mRNA_2705: 11073 - Hypothetical Protein, at 46347 to 46971 11073 mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47300 to 48078 11074

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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45,412 + 11072 mRNA_2704 0.80 0.2
45,441 - 11072 mRNA_2704 0.82 0.5
45,598 + -0.1
45,917 + 1.4
46,019 - 0.1
46,022 - 0.6
46,160 - 0.2
46,174 - 0.0
46,191 + 0.5
46,198 + 0.2
46,201 + 1.0
46,292 + 0.7
46,324 + 0.2
46,340 + 0.4
46,342 - -0.0
46,346 - -1.0
46,364 + 0.2
46,481 - 11073 mRNA_2705 0.21 -0.8
46,643 - 11073 mRNA_2705 0.47 2.3
46,779 + 11073 mRNA_2705 0.69 0.1
46,795 + 11073 mRNA_2705 0.72 -0.1
46,795 + 11073 mRNA_2705 0.72 0.6
46,796 - 11073 mRNA_2705 0.72 1.5
46,802 + 11073 mRNA_2705 0.73 0.6
46,881 - 11073 mRNA_2705 0.85 0.3
46,882 - 11073 mRNA_2705 0.86 0.2
46,893 + 11073 mRNA_2705 0.87 0.4
46,895 - 11073 mRNA_2705 0.88 0.2
46,909 + 1.2
46,911 + 0.2
46,948 + 0.3
46,951 + 1.6
46,959 + 0.4
46,965 + 0.2
46,997 + 1.4
46,998 - 1.0
47,002 - 0.7
47,014 + -0.4
47,028 + 0.5
47,051 - 1.1
47,055 - 0.2
47,064 - 2.0
47,065 + 2.4
47,067 + 0.2
47,078 + -0.4
47,093 - 1.2
47,117 - 0.1
47,121 + 0.4
47,174 + 0.3
47,183 - 0.7
47,249 + 1.3
47,260 - -0.0
47,365 - 1.1
47,405 + 11074 mRNA_2706 0.13 0.3
47,582 + 11074 mRNA_2706 0.36 0.2
47,717 + 11074 mRNA_2706 0.54 0.3
47,950 - 11074 mRNA_2706 0.83 -0.0
47,966 + 11074 mRNA_2706 0.85 -0.1